Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31074
         (770 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5AZU7 Cluster: Putative uncharacterized protein; n=2; ...    35   1.9  
UniRef50_Q54CP4 Cluster: MCM family protein; n=1; Dictyostelium ...    33   7.9  

>UniRef50_A5AZU7 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 260

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -1

Query: 761 DSEVRFLNKLICKPTEFLAGSFQRVAILIRQ*IQRSTA--LVRASVSKSSQVEPVSSPTR 588
           D ++++LN+ I K    ++GSF+R+A    + ++ S      R  +  + +VE  SSP R
Sbjct: 115 DLDIKYLNQNISKCRSQISGSFRRIAQHCAKWLRNSPGKRYQRIRICLTGEVETPSSPIR 174

Query: 587 LGVPGI 570
              PG+
Sbjct: 175 RQAPGV 180


>UniRef50_Q54CP4 Cluster: MCM family protein; n=1; Dictyostelium
           discoideum AX4|Rep: MCM family protein - Dictyostelium
           discoideum AX4
          Length = 757

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 156 LTMKMLKTQ*VLISFRRTYFKPGTMVITASNTHTIQNIDTETLHVK 293
           L  K++K Q ++IS  RT  KP TMV+   N        T+TLH++
Sbjct: 138 LISKLVKVQGIVISASRTQPKPSTMVVKCKNCQ-----HTQTLHIR 178


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,515,580
Number of Sequences: 1657284
Number of extensions: 12798256
Number of successful extensions: 24586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24579
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)