Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31074
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   3.9  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    27   3.9  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   9.1  

>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
          family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 15 FTFEYWDSEPSM*NISS 65
          F F+YWDS+P   N+SS
Sbjct: 34 FLFKYWDSKPLGKNVSS 50


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 490 SHHYIIVELISLLTRRLETWYSFIFSYELTGHTGAPCLLCYG 365
           S+ Y+++ +    +   +TWY+ +F Y        PCLL +G
Sbjct: 135 SNRYVVICMNGCYSSFYQTWYTLLFFYI------PPCLLSFG 170


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 743 LNKLICKPTEFLAGSFQRVAILIRQ*IQRSTALVRA 636
           + KL+ KP E L+G F ++A L+    ++S  L+ A
Sbjct: 541 ITKLVAKPHEQLSGVFNQIANLLEN-KEKSRELLEA 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,973
Number of Sequences: 5004
Number of extensions: 58672
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)