Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31074
         (770 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118675-1|AAM50535.1| 1073|Drosophila melanogaster AT05180p pro...    30   4.0  
AE014297-1565|AAF54847.1| 1059|Drosophila melanogaster CG14395-P...    30   4.0  
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran...    29   7.1  

>AY118675-1|AAM50535.1| 1073|Drosophila melanogaster AT05180p
           protein.
          Length = 1073

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -1

Query: 665 IQRSTALVRASVSKSSQVEPVSSPTRLGVPGIAS*ATSKRLGKKKLICNS 516
           I  S+AL  ++    SQ+ P +S  R    G AS A S R G+KK + NS
Sbjct: 366 IASSSALASSNYLSRSQIVPSASGRRSSFRGSASGAPS-RSGRKKRVSNS 414


>AE014297-1565|AAF54847.1| 1059|Drosophila melanogaster CG14395-PA
           protein.
          Length = 1059

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -1

Query: 665 IQRSTALVRASVSKSSQVEPVSSPTRLGVPGIAS*ATSKRLGKKKLICNS 516
           I  S+AL  ++    SQ+ P +S  R    G AS A S R G+KK + NS
Sbjct: 366 IASSSALASSNYLSRSQIVPSASGRRSSFRGSASGAPS-RSGRKKRVSNS 414


>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 1217

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +3

Query: 198 FRRTYFKPGT-MVITASNTHTIQNIDTETLHVKYTLL*QLKKS--RKHTLFLMSELLERP 368
           FR  ++ P T +  T   TH+I  ID   +H K      + K+  +K    ++ + + R 
Sbjct: 288 FRDIFYNPETPLTFTNKITHSIPTIDNTPIHTKSYRYPFVHKTEVKKQIESMLDQQIIRS 347

Query: 369 *HSKQGAPV 395
            HS   APV
Sbjct: 348 SHSPWSAPV 356


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,276,355
Number of Sequences: 53049
Number of extensions: 574273
Number of successful extensions: 862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)