Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31074
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70312-5|CAA94384.1|  361|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U20903-1|AAA84394.1|  361|Caenorhabditis elegans cyclin B protein.     30   1.6  
AF016662-7|AAB66060.1|  561|Caenorhabditis elegans Hypothetical ...    29   3.7  

>Z70312-5|CAA94384.1|  361|Caenorhabditis elegans Hypothetical
           protein ZC168.4 protein.
          Length = 361

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = +3

Query: 186 VLISFRRTYFKPGTMVITASNTHTIQNIDTET-LHVKYTLL*QLKKSRKHTLFLMSELLE 362
           V+ S  R++    +M+I A   H +  I+ E  + V    L   KK  +  + L++E+  
Sbjct: 253 VMASTPRSHIASASMII-ALEVHPVDGIEAENAVSVICKQLGASKKVIEDAVALLAEVSY 311

Query: 363 RP*HSKQGAPVCPVNSYEKIKLYQVSRRLVNRLI 464
           +  + KQG  V   N Y+  KL QVS  + + ++
Sbjct: 312 K--NFKQGKLVAIKNKYQSSKLAQVSNLMTDDVL 343


>U20903-1|AAA84394.1|  361|Caenorhabditis elegans cyclin B protein.
          Length = 361

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = +3

Query: 186 VLISFRRTYFKPGTMVITASNTHTIQNIDTET-LHVKYTLL*QLKKSRKHTLFLMSELLE 362
           V+ S  R++    +M+I A   H +  I+ E  + V    L   KK  +  + L++E+  
Sbjct: 253 VMASTPRSHIASASMII-ALEVHPVDGIEAENAVSVICKQLGASKKVIEDAVALLAEVSY 311

Query: 363 RP*HSKQGAPVCPVNSYEKIKLYQVSRRLVNRLI 464
           +  + KQG  V   N Y+  KL QVS  + + ++
Sbjct: 312 K--NFKQGKLVAIKNKYQSSKLAQVSNLMTDDVL 343


>AF016662-7|AAB66060.1|  561|Caenorhabditis elegans Hypothetical
           protein C33C12.8 protein.
          Length = 561

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 615 LRGFANTSPNKSSASLNLLPDQNRDPLKRSGEKLSGL 725
           ++GF +T  + S A+L  LPDQ  D + R     SGL
Sbjct: 143 IQGFGSTFSDASGANLKSLPDQMADTILRQYFSDSGL 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,571
Number of Sequences: 27780
Number of extensions: 315220
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)