Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31074
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09220.1 68416.m01096 laccase family protein / diphenol oxida...    30   1.9  
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi...    28   7.9  

>At3g09220.1 68416.m01096 laccase family protein / diphenol oxidase
           family protein similar to laccase [Pinus
           taeda][GI:13661201], laccase GB:CAA74105 [Populus
           balsamifera subsp. trichocarpa]; contains Pfam profile:
           Multicopper oxidases
          Length = 567

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 603 HGFNL----RGFANTSPNKSSASLNLLPDQNRDPL 695
           HGFN     +GF N  P++  + LNL+  Q+R+ L
Sbjct: 473 HGFNFHVLAQGFGNYDPSRDRSKLNLVDPQSRNTL 507


>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 685

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 523 VIRLIKLSIGLSHHYIIVE--LISLLTRRLETWYSFIFSYELTGHTGAPCLLCYGRSNNS 350
           V  L ++ + L +H++  +  L++LL +R   +    +SY L  HT  P +  Y    N 
Sbjct: 26  VNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLING 85

Query: 349 LIKNRV 332
            + N +
Sbjct: 86  FVNNHL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,867,312
Number of Sequences: 28952
Number of extensions: 282947
Number of successful extensions: 574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)