Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31073
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 31 0.84
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 29 3.4
11_06_0186 + 21027581-21028825 29 4.5
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687... 29 4.5
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548... 29 4.5
01_03_0127 + 12787664-12787907,12790660-12790715,12792203-127924... 29 4.5
01_01_0796 + 6190931-6192745 29 5.9
09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122 28 7.8
06_03_0746 - 24111579-24112348,24113164-24113256,24113355-241134... 28 7.8
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 31.5 bits (68), Expect = 0.84
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 455 LRIESQSVGTYKIVAYTVHAVSESAAIAGVA*FEVSELMGTQFCRLRWL*RGSFETR 285
L+ + Q+ G + AY HA+S+ I G+ F M FCR + GS + R
Sbjct: 545 LQYQQQTDGFEESYAYLEHAISQMGNIDGILGFSQGAAMAALFCRQQQKTCGSLKFR 601
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 575 VSISGWGTKFSTYWYFGATESEESFSIAVGDFI 477
VS GWGTK+ ++W T ESFS +GD I
Sbjct: 498 VSYHGWGTKYDSFWCCYGT-GIESFS-KLGDSI 528
>11_06_0186 + 21027581-21028825
Length = 414
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -2
Query: 623 PIDAQEILLAIV-----VRPVVSISGWGTKFSTYWYFGATESEESFSIAVGDFIRPF 468
PI ++I LA V V+P+ SG K+ WY G +S SI D +R F
Sbjct: 110 PITGKQIALAPVTTIEQVKPIFDDSGAVHKYKYSWYTGQMTVSDSPSILAPDELRNF 166
>06_01_1193 +
10264360-10264504,10264763-10264910,10268350-10268748,
10268925-10271214
Length = 993
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 208 NYAPMVSVTIPT*ISMYIRASTLTKCRVSNDPRYSHRNRQNCVPINSDTSN*ATPAIAAD 387
N + T+PT IS TL RVSN+ +S + C+ N TP++++D
Sbjct: 635 NMSSTYIATLPTEISKLQCLRTLRCTRVSNNNNFSINHPVKCLTNTMCLPNIFTPSVSSD 694
Query: 388 S 390
+
Sbjct: 695 N 695
>02_01_0735 +
5484398-5484400,5484670-5484773,5485012-5485138,
5485212-5485306,5485597-5485720,5486523-5486603,
5487177-5487275,5487416-5487583,5487688-5487775,
5487860-5487930,5488000-5488068,5488368-5488499,
5488740-5488946
Length = 455
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 261 PCQYPNEVPCLERSSLQPPQPTELCPHQFGYFKLGDARNCSGFRNCVNGV 410
P Y + V ++L PPQ C + G FK+G N S ++G+
Sbjct: 228 PQSYYDSVSMFFYNTLHPPQLPVKCSNNLGAFKVGTVTNESFIFEIISGL 277
>01_03_0127 +
12787664-12787907,12790660-12790715,12792203-12792473,
12792600-12792832
Length = 267
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 315 PQPTELCPHQFGYFKLGDARNCSGFRNCVNGVGYDFVCPDGLAF 446
P P+ C + F GD+ +G G+GY F P+G AF
Sbjct: 22 PSPSASCARRPVVFAFGDSNTDTG--GIAAGMGYYFPLPEGRAF 63
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +3
Query: 201 EEKLCPDGLRYNPNVNFDVYPCQYPNEVPCLERSSLQPPQPTELCPHQFGYFKLGDARNC 380
E L P YN ++ P +Y N E L QP G+ +G+ N
Sbjct: 481 EAHLPPAAQEYNQDLAVQQQPQEYENYDYMFENVGLSQAQPVAAGAGDAGFAAIGNDDNP 540
Query: 381 SGFRNCVNGVGYD 419
G++ V YD
Sbjct: 541 FGYQQLVASPLYD 553
>09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122
Length = 530
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 117 TGQCRELNERYPVSGSCDRYIECINGTAEEKLC 215
T CRE RY + GSC I+ + E KLC
Sbjct: 28 TNCCRERVWRYAMHGSCSIDIQRLAADLETKLC 60
>06_03_0746 -
24111579-24112348,24113164-24113256,24113355-24113460,
24113587-24113783,24113893-24114103,24114198-24114273,
24114347-24114426,24114659-24114754,24114894-24114965,
24115067-24115264,24115273-24115569
Length = 731
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 575 VSISGWGTKFSTYWYFGATESEESFSIAVGDFI 477
VS GWGT+++++W T ESFS +GD I
Sbjct: 325 VSYHGWGTQYNSFWCCYGT-GIESFS-KLGDSI 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,585,470
Number of Sequences: 37544
Number of extensions: 542825
Number of successful extensions: 1535
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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