Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31072
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.64 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 267 KWRGVSNFLVLCGDGVPTAGGVIGN 193
           +W G +   +L  DGVP++  VI N
Sbjct: 72  RWNGKTFVTILRNDGVPSSLNVISN 96


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 43  TVCKKNLEGQSFFAKGGRPFCKTHAR*KSNKNN 141
           TV   N + +S+F +GGR + K       N NN
Sbjct: 8   TVSYTNKKDESYFDEGGRSYGKGRGFIIQNNNN 40


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 305 GKLLSKVTVDRVQR--STHHDVIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFTPVP 478
           GK   + + DR++R  S    +I S S   +H+ N  ++    +   N + I     PVP
Sbjct: 282 GKTSKERSRDRMERERSKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVP 341


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 528 KHQFNISRMTLLICKVTKL*ILYV 599
           +H F IS M   +  +T + +LY+
Sbjct: 219 EHAFEISTMLFFVLPMTIIIVLYI 242


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 449 IITVKFTPVPPEFDSQMISPQLAKRSKT-PIQ 541
           +I V   PVP   DS ++SP   K S + P+Q
Sbjct: 790 MIPVYCVPVPQVNDSTILSPVREKLSSSQPMQ 821


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,160
Number of Sequences: 438
Number of extensions: 4154
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)