Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31072
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 39 0.003
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 38 0.006
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 37 0.010
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ... 36 0.018
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro... 35 0.056
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 34 0.073
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 32 0.30
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 31 0.68
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 31 0.68
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 31 0.90
At5g62820.1 68418.m07885 integral membrane protein, putative MtN... 30 1.2
At1g74940.1 68414.m08695 senescence-associated protein-related s... 30 1.2
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica... 29 2.1
At2g32300.1 68415.m03949 uclacyanin I identical to uclacyanin I ... 29 2.1
At1g19200.1 68414.m02390 senescence-associated protein-related s... 29 2.8
At4g28715.1 68417.m04107 myosin heavy chain, putative similar to... 29 3.6
At2g18460.2 68415.m02148 expressed protein contains Pfam domain,... 29 3.6
At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identic... 29 3.6
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 28 4.8
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 6.4
At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein c... 28 6.4
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 27 8.4
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 8.4
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 8.4
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 19 YHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 114
YH CF CT CK L+ ++ + G +CKTH
Sbjct: 30 YHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTH 61
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 19 YHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 114
YH CF CT CK L+ S+ + G +CK H
Sbjct: 30 YHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 37.1 bits (82), Expect = 0.010
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 13 NNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 114
N YH CF CT CK L ++ + G +CK H
Sbjct: 28 NTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPH 61
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 16 NYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 114
+YH CF CT L S+ + G +CK H
Sbjct: 125 SYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVH 157
>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
gi|12044357|gb|AF312027.1|AF312027
Length = 1399
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 266 FDGGLFSDIRSTDGKLLS--KVTVDRVQRSTHHDVIDSPSTVEVHDKNYVDDIIKSETII 439
FD G+ SD++ DGKLLS + D V + + + SPS+ + D ++K +
Sbjct: 1020 FDSGILSDLQGKDGKLLSLQPTSADVVYKEVNDSELSSPSSDNLEDAPPSISLVKKQFAG 1079
Query: 440 NQDIITVKFT 469
I + +FT
Sbjct: 1080 RYAISSEEFT 1089
>At3g05470.1 68416.m00599 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 884
Score = 34.7 bits (76), Expect = 0.056
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = +2
Query: 65 KDRASSPREVGLSVKHTPVKSPIKIIYNSDTVYSTTTFRPVSPLPITPPAVGTPSPQRTR 244
K S R + S +P +P + + + + P P PI PP + P PQRT
Sbjct: 79 KPSTSRRRNLAESASFSPWPAPSPSPFPNGGPIESPAYPPAPPRPI-PPHLRRPLPQRTH 137
Query: 245 KLETP-----LHFDGGLFSDI 292
LE P H GG F I
Sbjct: 138 PLEQPEIQRRKHEKGGTFKKI 158
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 34.3 bits (75), Expect = 0.073
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 16 NYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 114
+YH CF C+ CK L+ ++ + G +C+ H
Sbjct: 29 SYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 19 YHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 114
YH CF C+ C L ++ + G +CKTH
Sbjct: 31 YHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 16 NYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 114
+YH CF C L S+ A G +CK H
Sbjct: 126 SYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVH 158
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 7 LNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTHAR*KSNKNNLQLG 153
L NN+H C +CKK ++FF G +C +K + LG
Sbjct: 719 LPNNHHMSRPFCFICKKRCPHKTFFQCNGFEYCSRSCLLTKSKEVIYLG 767
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 31.1 bits (67), Expect = 0.68
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 10 NNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 114
N YH CF C CK L+ ++ + G +C+ H
Sbjct: 27 NRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
Score = 30.7 bits (66), Expect = 0.90
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 19 YHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 114
YH CF CT + ++ A G+ +CK H
Sbjct: 130 YHKSCFKCTHGGCTISPSNYIAHEGKLYCKHH 161
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 30.7 bits (66), Expect = 0.90
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 19 YHSQCFNCTVCKKNLEGQSFFAKGGRPFCK 108
+H +CF C C K + F G RP+ K
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHK 34
>At5g62820.1 68418.m07885 integral membrane protein, putative MtN24,
Medicago truncatula, EMBL:MTY15290; contains Pfam
PF04535 : Domain of unknown function (DUF588); contains
4 transmembrane domains ; similar to putative ethylene
responsive element binding protein (GI:22135858)
[Arabidopsis thaliana]
Length = 297
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 113 TPVKSPIKIIYNSDTVYST--TTFRPVSPLPITPPAVGTPSPQRTRKLETPLH 265
+P SP KI V T F P+ P PI PP P P+R R P++
Sbjct: 43 SPEGSPFKIENPKSIVAGNKLTQFSPL-PSPIPPPPPQFPPPRRQRNARVPMN 94
>At1g74940.1 68414.m08695 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana]
Length = 222
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 37 NCTVCKKNLEGQSFFA-KGGRPFCKTHAR*KSNKNNLQLGHCLLDYYFSSGFAVANHAAG 213
+C +CKK L+G+ + KG FC R N+ + C ++ + +AAG
Sbjct: 153 SCCLCKKKLQGKDIYMYKGEMGFCSAECRSVQIMNDERQEQCKTQVSRNADVLSSPYAAG 212
Query: 214 GR 219
R
Sbjct: 213 QR 214
>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
to gi_3883126_gb_AAC77826
Length = 135
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 167 TTTFRPVSPLPI-TPPAVGTPSPQRTRKLETP 259
T T P +P P+ TPP V TP P T TP
Sbjct: 29 TATPPPATPPPVATPPPVATPPPAATPAPATP 60
>At2g32300.1 68415.m03949 uclacyanin I identical to uclacyanin I
GI:3399767 from [Arabidopsis thaliana]; contains Pfam
profile PF02298: Plastocyanin-like domain; identical to
cDNA uclacyanin I GI:3399766
Length = 261
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 158 VYSTTTFRPVSPLPITPPAVGTPSP 232
V T T P +PLP T P++ PSP
Sbjct: 121 VVPTATVAPTAPLPNTVPSLNAPSP 145
>At1g19200.1 68414.m02390 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana];
Length = 215
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 37 NCTVCKKNLEGQSFFA-KGGRPFCKTHAR-*KSNKNNLQLGHCLLDYYFSSGFAVAN 201
+C +CKK L+G+ + KG FC R K +++L+ H L +G +A+
Sbjct: 153 SCCLCKKKLQGKDIYMYKGDEGFCSKECRSLKIMEDSLKEQHKLTSVEVLTGEEIAS 209
>At4g28715.1 68417.m04107 myosin heavy chain, putative similar to
myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066
Length = 639
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 372 ESMTSWCVERCTLSTVTLLSNFPSVLLMSENSPPSKWRGV 253
+++ S C++ ST L +F S M NSP W G+
Sbjct: 399 QTLLSLCIQAPRTSTGRSLRSFRSSKTMRNNSPLDHWNGI 438
>At2g18460.2 68415.m02148 expressed protein contains Pfam domain,
PF04367: Protein of unknown function (DUF502); contains
non-consensus splice sites
Length = 246
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 77 SSPREVGLSVKHTPVKSPIKIIY 145
+SPR+V LSV +P+ SPI IY
Sbjct: 19 ASPRDVVLSVPPSPLASPIHAIY 41
>At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identical
to wall-associated kinase 2 [Arabidopsis thaliana]
GI:4826399; induced by salicylic acid or INA
(PMID:10380805)
Length = 732
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 334 IDRYFAK*LSICTSYVGKQSSIEVEGCFQLP 242
+++Y +SIC S K S EGC Q+P
Sbjct: 136 VEKYSTGCISICDSATTKNGSCSGEGCCQIP 166
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +2
Query: 47 CVKRTSKDRASSPREVGLSVKHTPVKSPIKIIYNSDTVYSTTTFRPVSPLPITPPAVGTP 226
C K +S+P + K TPV P ++ V +T +P SP+P TP V P
Sbjct: 407 CSKDKCAGGSSTPSKPSPVHKPTPV--PTTPVHKPTPVPTTPVQKP-SPVPTTP--VQKP 461
Query: 227 SPQRTRKLETP 259
SP T + P
Sbjct: 462 SPVPTTPVHEP 472
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 155 TVYSTTTFRPVSPLPITPPAVGTPSPQRTRKLETP 259
+V S T P P+P PP V P P T + +P
Sbjct: 161 SVPSPTPPVPTDPMPSPPPPVSPPPPTPTPSVPSP 195
>At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 161
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 40 CTVCKKNLEGQSFFAKGGRPFCKTH 114
CTVC+K + F + G FC +H
Sbjct: 102 CTVCRKRVGLTGFMCRCGTTFCGSH 126
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 104 VKHTPVKSPIKIIYNSDTVYSTTTFRPVSPL---PITPPAVGTPSPQRTRKLETP 259
VK PV P IY S V +P +P PI PP V P+P + ++ P
Sbjct: 436 VKPPPVHKPPTPIY-SPPVKPPPVHKPPTPTYSPPIKPPPVKPPTPTYSPPVQPP 489
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 164 STTTFRPVSPLPITPPAVGTPSP 232
S T P P P TPP TP P
Sbjct: 25 SPPTATPAPPTPTTPPPAATPPP 47
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 164 STTTFRPVSPLPITPPAVGTPSP 232
S T P P P TPP TP P
Sbjct: 25 SPPTATPAPPTPTTPPPAATPPP 47
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,745
Number of Sequences: 28952
Number of extensions: 310663
Number of successful extensions: 1142
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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