Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31069
         (780 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    49   1e-04
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    46   8e-04
UniRef50_A7SLZ0 Cluster: Predicted protein; n=1; Nematostella ve...    35   2.0  
UniRef50_Q8BPT9 Cluster: 0 day neonate eyeball cDNA, RIKEN full-...    33   8.0  
UniRef50_A3H6N8 Cluster: Conserved hypothetical transporter prec...    33   8.0  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 24/50 (48%), Positives = 34/50 (68%)
 Frame = -2

Query: 551 TLATKGSTSELTHRHSPLSFSPDLLSGSRFRSGGRFCEALLLIGSVLATL 402
           +L T G ++E  HR  PLSFSPDLLSGSRFR+G  +   +L +G++   +
Sbjct: 380 SLKTTGHSTENEHRCCPLSFSPDLLSGSRFRTGAEY--EMLGLGTIAGNI 427


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 46.4 bits (105), Expect = 8e-04
 Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -2

Query: 503 PLSFSPDLLSGSRFRSGGRFCEALLLIGSVLA-TLRFEPREV 381
           P+ F       SRFRS GRFCEALLL+G VLA +LR  P E+
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYEL 115


>UniRef50_A7SLZ0 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 1820

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
 Frame = -2

Query: 605 AKCRVLSEIHRSPSSSNPTLATKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR-FCEALL 429
           +K  V S ++++ SSS+PT  +  S+ E  H H P      L   S   S  R  C    
Sbjct: 301 SKSSVNSSMYQASSSSSPTSLSTLSSPETRHYHLPHLQRKQLSDASSSSSSSREGCVLQR 360

Query: 428 LIG-SVLATLRFEPREVTYTR*GEAEIASQG----YQHR*EKKSE 309
            +G S+L +L   P E    +  EAE++SQ       HR +KK E
Sbjct: 361 TMGTSILESLEESPEEQEVGK-QEAEMSSQEDLFLSPHRQDKKDE 404


>UniRef50_Q8BPT9 Cluster: 0 day neonate eyeball cDNA, RIKEN
           full-length enriched library, clone:E130010M05
           product:hypothetical protein, full insert sequence; n=1;
           Mus musculus|Rep: 0 day neonate eyeball cDNA, RIKEN
           full-length enriched library, clone:E130010M05
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 136

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -1

Query: 216 FFPLSRQ*THIVSQSTVYFRFIEQKTRLK 130
           FFP  R  TH+ +  +V+FR IE+KT+LK
Sbjct: 38  FFPTERD-THVRAHFSVHFRIIERKTQLK 65


>UniRef50_A3H6N8 Cluster: Conserved hypothetical transporter
           precursor; n=1; Caldivirga maquilingensis IC-167|Rep:
           Conserved hypothetical transporter precursor -
           Caldivirga maquilingensis IC-167
          Length = 541

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 223 IHT*GRYLALFWYKYIFYWYLLVIVLRGISLFFSY 327
           + T   +L ++W  + + W+   +++ G+ LFF Y
Sbjct: 342 VATIAAFLIVYWSSFYYLWFAFALIMAGLPLFFMY 376


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,881,242
Number of Sequences: 1657284
Number of extensions: 11256759
Number of successful extensions: 23997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23976
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)