Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31069
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    31   0.24 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.7  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    27   4.0  
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    25   9.2  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 743 KCYFI*KNKATSNIVKFLLRTRAEPELAVS 654
           KCY+I    AT+ I + L  T++E EL++S
Sbjct: 20  KCYYIVSENATATIFRILKITQSEDELSIS 49


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 644 FIWY*RPAPAPLGSLTKISRYLTLLYFFK 730
           F WY    PAPL S T++S  +T +  F+
Sbjct: 355 FDWYLHNDPAPLYSFTRVSGIVTYMKIFE 383


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 238 RYLALFWYKYIFYWYLLVIVLRGISLFFSYL 330
           RYL LFW     Y++L+ IV      +  YL
Sbjct: 47  RYLNLFWRYKSLYYFLMRIVFIASESYICYL 77


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 638 PLITKINITY*AKCRVLSEIHRSPSSSNPTLATKGSTSELTHRHSPLS 495
           PLI++I+ T  +    ++ +  + ++SN + A  G  SEL  R S L+
Sbjct: 107 PLISQISSTNASVETQVNSVQTTNTTSNTSKAPNGLDSELNERLSTLT 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,865
Number of Sequences: 5004
Number of extensions: 50190
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)