Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31069
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    29   5.5  
02_01_0560 - 4117565-4118176,4118443-4118477,4118836-4118962           28   9.6  

>03_02_0199 -
           6347980-6348225,6348300-6348341,6348824-6348978,
           6349369-6349475,6349608-6349733,6349809-6349890,
           6350057-6350130,6351184-6352631,6353391-6353540,
           6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -1

Query: 687 KDPSGAGAGR*YHIKRTFNYKDKYHVLSKMSRIKRNSPVTVLVEPDACDEGLDERINP 514
           K P+G G    ++     +++D+    SKM +I R + + V  E   CDEG+D++  P
Sbjct: 346 KQPAGYG----FYFPAKDDHEDEDTSNSKMKKISRLALI-VEEERSLCDEGVDQQTTP 398


>02_01_0560 - 4117565-4118176,4118443-4118477,4118836-4118962
          Length = 257

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 590 LSEIHRSPSSSNPTLATKGSTSELTH 513
           L+++HR+ +  +  LA KG   ELTH
Sbjct: 211 LAKVHRNQNRISHVLANKGRVEELTH 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,656,212
Number of Sequences: 37544
Number of extensions: 292880
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)