Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31069
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.064
SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_23613| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_45043| Best HMM Match : Rho_N (HMM E-Value=0.0046)                  29   3.2  
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)                 29   5.6  
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)             28   7.4  
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)                   28   9.8  

>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 35.1 bits (77), Expect = 0.064
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
 Frame = -2

Query: 605 AKCRVLSEIHRSPSSSNPTLATKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR-FCEALL 429
           +K  V S ++++ SSS+PT  +  S+ E  H H P      L   S   S  R  C    
Sbjct: 151 SKSSVNSSMYQASSSSSPTSLSTLSSPETRHYHLPHLQRKQLSDASSSSSSSREGCVLQR 210

Query: 428 LIG-SVLATLRFEPREVTYTR*GEAEIASQG----YQHR*EKKSE 309
            +G S+L +L   P E    +  EAE++SQ       HR +KK E
Sbjct: 211 TMGTSILESLEESPEEQEVGK-QEAEMSSQEDLFLSPHRQDKKDE 254


>SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 425 IGSVLATLRFEPREVTYTR*GEAEIASQGYQHR*EKKSEMPLKTI 291
           IG + AT +  P+E  Y R  + +I+ +GYQH  E +    +KT+
Sbjct: 537 IGKLNAT-QLPPKEAFYARLNDTDISEEGYQHAREVREAFEMKTM 580


>SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 626 KINITY*AKCRVLSEIHR--SPSSSNPTLATKGSTSELTHRHSPLSFSPDLLSGSRFRS 456
           KI+  Y A  + +   HR  +P  S+    T   + ELTH +SP   S + L   RFRS
Sbjct: 209 KISRDYSAAIKCIGR-HRVPNPGESHEAEETSSESFELTHENSPRHISVEDLPKGRFRS 266


>SB_23613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 30/95 (31%), Positives = 42/95 (44%)
 Frame = -2

Query: 572 SPSSSNPTLATKGSTSELTHRHSPLSFSPDLLSGSRFRSGGRFCEALLLIGSVLATLRFE 393
           SP+ S+P +    +T E   R      S  L+SG+ F S GRF  A L  GS L      
Sbjct: 6   SPNESSPLMPYSSATIENLERPDVADDSSSLISGTVFAS-GRF--AWLARGSSL------ 56

Query: 392 PREVTYTR*GEAEIASQGYQHR*EKKSEMPLKTIT 288
             EV  TR G  + A +   H      +M + ++T
Sbjct: 57  --EVISTRDGSRKAACRFGSHSGHNNEDMVISSVT 89


>SB_45043| Best HMM Match : Rho_N (HMM E-Value=0.0046)
          Length = 589

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 425 IGSVLATLRFEPREVTYTR*GEAEIASQGYQH 330
           IG + AT +  P+E  Y R  + +I+ +GYQH
Sbjct: 556 IGKLNAT-QLPPKEAFYARLNDTDISEEGYQH 586


>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
          Length = 493

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 587 SEIHRSPSSSNPTLA-TKGSTSELTHRHSP 501
           S +  SP  +N  LA TKG TSE   RH P
Sbjct: 4   SPLQGSPQGTNHNLARTKGQTSEGNRRHHP 33


>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 413 LATLRFEPREVTYTR*GEAEIASQGYQHR*EKKSEMPLKTI 291
           L T++  P+E  Y+R  + +I+ + YQH  +      +KT+
Sbjct: 614 LDTVQLPPKEAFYSRLNDTDISEEDYQHAQKVWETFEMKTM 654


>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
          Length = 1480

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 413 LATLRFEPREVTYTR*GEAEIASQGYQHR*EKKSEMPLKTI 291
           L   +F P+E  Y+R  + +I+ + YQH  +      +KT+
Sbjct: 655 LDATQFPPKEAFYSRLNDTDISEEDYQHAKKVWETFEMKTM 695


>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
          Length = 1253

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 587 SEIHRSPSSSNPTLA-TKGSTSELTHRHSP 501
           S +  SP  +N  LA TKG TSE   RH P
Sbjct: 369 SPLQGSPQVTNHNLARTKGQTSEGNRRHHP 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,823,983
Number of Sequences: 59808
Number of extensions: 355714
Number of successful extensions: 721
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)