Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31064
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022) 31 0.62
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8) 29 2.5
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 29 3.3
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 29 3.3
SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05) 28 5.8
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 28 5.8
SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62) 28 5.8
>SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 425 ENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGF 571
EN L + GK + + + I G+YEY GP + RV AD GF
Sbjct: 154 ENSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMYARVIVWADHLGF 201
>SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)
Length = 395
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 416 YETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGF 571
+ ++N L + GK + + + I G+YEY GP + RV AD GF
Sbjct: 315 FTSKNSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMYARVIVWADHLGF 365
>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
Length = 541
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 396 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAP 524
PK T TRP+TR + R +T PKTK S+S+ T T P
Sbjct: 270 PK-TRPKTRPKTRPKTRPKTRPKT-RPKTK-SKSKSKTKTATP 309
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +2
Query: 290 SKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVENV 469
+ ++ P V +K P G DY Y + D +A YH L E +E++
Sbjct: 183 ANIIAPISVVNKF--PPGTVVDYAYNVFYQDRKIAHTPYHALTVGERDCYNARRDMLEHL 240
Query: 470 G 472
G
Sbjct: 241 G 241
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 316 NVCGCDHLAGNVCGCDWHGNGRL 248
N GC+ GN GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404
>SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1205
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +2
Query: 368 IIRYDNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVD 547
I+RYD + P Y E++I E K +++ G+ GF+E +G D
Sbjct: 491 IVRYDRNKVPSLYQLFKFIESRIEFELRTKHKSIFGYALGVIFAGFFEGIGMFKPKLG-D 549
Query: 548 YTADENGFVA 577
+ENG VA
Sbjct: 550 SKLNENGHVA 559
>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 138 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 227
PVL +P S PRR S +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140
>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 325 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 197
L GN CG L GN CG +GN GN +G+ + V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279
>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
Length = 304
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 138 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 227
PVL +P S PRR S +LTR PA
Sbjct: 86 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -1
Query: 310 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 230
CG CD AG V CDW G+G L D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698
>SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)
Length = 546
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 408 TTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 530
T T R R+ + P RS L P+ +ASRSRD APT+
Sbjct: 262 TELTERRKRYFVS-PLRSSCLWPRGRASRSRD--GACAPTM 299
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,161
Number of Sequences: 59808
Number of extensions: 254368
Number of successful extensions: 866
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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