Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31061
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 221 6e-59
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 81 2e-16
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 81 2e-16
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 81 2e-16
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 79 9e-16
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 75 1e-14
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 69 5e-13
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 60 3e-10
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 58 2e-09
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 51 2e-07
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 51 2e-07
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 46 6e-06
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 44 2e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 41 2e-04
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 38 0.001
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 32 0.076
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 27 3.8
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 3.8
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 27 3.8
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 6.6
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 26 6.6
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 25 8.7
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 8.7
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 8.7
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 221 bits (541), Expect = 6e-59
Identities = 101/158 (63%), Positives = 120/158 (75%)
Frame = +3
Query: 192 QSQCANVRNTTVLSGLTPLSIILKRHYAEKQIFERTKPHCNVGTIGHVDHGKTTLTAAIT 371
+ C + + SGL + R YA++++F R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 15 RKNCLRLNRISFASGLINRFTVPARTYADEKVFVRKKPHVNIGTIGHVDHGKTTLTAAIT 74
Query: 372 KVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMI 551
K LSDL A Y+ ID APEEKARGITI+ AHVEY+T RHY H DCPGHADYIKNMI
Sbjct: 75 KCLSDLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMI 134
Query: 552 TGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHV 665
TG A MDGAI+VV+ATDG MPQTREHLLLA+Q+G++ +
Sbjct: 135 TGAATMDGAIIVVSATDGQMPQTREHLLLARQVGVKQI 172
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/27 (62%), Positives = 24/27 (88%)
Frame = +1
Query: 667 VVFINKVDAADEEMVELVEMEIRELMT 747
VV+INKVD + +M+ELVEME+REL++
Sbjct: 173 VVYINKVDMVEPDMIELVEMEMRELLS 199
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 81.0 bits (191), Expect = 2e-16
Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 22/146 (15%)
Frame = +3
Query: 294 RTKPHCNVGTIGHVDHGKTTLTAAIT---------------KVLSDLNLAQKKGYADIDN 428
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 429 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 608
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D AIL++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGE 122
Query: 609 MP-------QTREHLLLAKQIGIQHV 665
QTREH LLA +G++ +
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQL 148
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 81.0 bits (191), Expect = 2e-16
Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 22/146 (15%)
Frame = +3
Query: 294 RTKPHCNVGTIGHVDHGKTTLTAAIT---------------KVLSDLNLAQKKGYADIDN 428
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 429 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 608
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D AIL++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGE 122
Query: 609 MP-------QTREHLLLAKQIGIQHV 665
QTREH LLA +G++ +
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQL 148
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 80.6 bits (190), Expect = 2e-16
Identities = 52/146 (35%), Positives = 75/146 (51%), Gaps = 22/146 (15%)
Frame = +3
Query: 294 RTKPHCNVGTIGHVDHGKTTLTAAIT---------------KVLSDLNLAQKKGYADIDN 428
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 429 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 608
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D A+L++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGE 122
Query: 609 MP-------QTREHLLLAKQIGIQHV 665
QTREH LLA +G++ +
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQL 148
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 78.6 bits (185), Expect = 9e-16
Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 22/144 (15%)
Frame = +3
Query: 300 KPHCNVGTIGHVDHGKTTLTAAIT------------KVLSDLNLAQKKGYA---DIDNAP 434
K H N+ IGHVD GK+TL I K+ + A K+ + +D+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 435 EEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMP 614
EE+ +G T+ V ++TE R + D PGH Y+ NMI G +Q D +LV++A G
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 615 -------QTREHLLLAKQIGIQHV 665
QTREH +LA+ GI H+
Sbjct: 356 AGFERGGQTREHAVLARTQGINHL 379
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 74.9 bits (176), Expect = 1e-14
Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 24/152 (15%)
Frame = +3
Query: 282 QIFERT--KPHCNVGTIGHVDHGKTTLTAAITKVLSDLN--LAQK---------KG---Y 413
+IFE++ KP ++ GHVD GK+T+ I L ++N QK KG Y
Sbjct: 167 EIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSY 226
Query: 414 A-DIDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVV 590
A +D EE+ARG+T++VA ++++++ Y D PGH D+I MI G + D A+LVV
Sbjct: 227 AWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVV 286
Query: 591 AATD-----GVMP--QTREHLLLAKQIGIQHV 665
++ G + QTREH L + +GI +
Sbjct: 287 DSSQNNFERGFLENGQTREHAYLLRALGISEI 318
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 69.3 bits (162), Expect = 5e-13
Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Frame = +3
Query: 312 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYAD-----IDNAPEEKARGITINVAHV 476
NVG I H+D GKTTLT K+L G D +D P E+ RGITIN A +
Sbjct: 30 NVGIIAHIDAGKTTLTE---KMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAI 86
Query: 477 EYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGI 656
+ + D PGHAD+ + A +DGA+ ++ + GV QT+ A + GI
Sbjct: 87 SFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQATKRGI 146
Query: 657 QHVGGVHK 680
V V+K
Sbjct: 147 PKVIFVNK 154
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 60.1 bits (139), Expect = 3e-10
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 23/141 (16%)
Frame = +3
Query: 312 NVGTIGHVDHGKTTLTAAITKVLS-------DLNLAQKKGYAD--IDNAPEEKA------ 446
N+GTIGHV HGK+T+ AI+ V + + N+ K GYA+ I E+
Sbjct: 25 NIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCSNEECPRPGCY 84
Query: 447 RGITINVA-HVEYQTEQ------RHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 605
R + N H + RH DCPGH + M+ G A MD A+L++A +
Sbjct: 85 RSYSSNKEDHPPCEICNSPMNLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES 144
Query: 606 V-MPQTREHLLLAKQIGIQHV 665
PQT EHL + + ++H+
Sbjct: 145 CPQPQTSEHLAAIEIMQLKHI 165
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 57.6 bits (133), Expect = 2e-09
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Frame = +3
Query: 312 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINV---AHVEY 482
N I H+DHGK+TL+ I K+ +N + +D E+ RGIT+ + + Y
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQF-LDKLEVERRRGITVKAQTCSMIYY 118
Query: 483 QTEQRHYGHT-DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLA 641
Q + + D PGH D+ ++ A +G IL+V A+ G+ QT + +A
Sbjct: 119 YHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMA 172
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 50.8 bits (116), Expect = 2e-07
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Frame = +3
Query: 312 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 491
N+ I HVDHGK+TLT ++ + ++ A+ +D +E+ RG+TI + E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFAE 80
Query: 492 QRH----------------YGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTR 623
D PGH D+ + DGA++VV +GV QT
Sbjct: 81 MTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 140
Query: 624 EHLLLAKQIGIQHVGGVHK 680
L A I+ V V+K
Sbjct: 141 TVLRQALGERIRPVVVVNK 159
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 50.8 bits (116), Expect = 2e-07
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Frame = +3
Query: 312 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 491
N+ I HVDHGK+TLT ++ + ++ A+ +D +E+ RG+TI + E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFAE 80
Query: 492 QRH----------------YGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTR 623
D PGH D+ + DGA++VV +GV QT
Sbjct: 81 MTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 140
Query: 624 EHLLLAKQIGIQHVGGVHK 680
L A I+ V V+K
Sbjct: 141 TVLRQALGERIRPVVVVNK 159
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 46.0 bits (104), Expect = 6e-06
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 24/187 (12%)
Frame = +3
Query: 132 MASITFVKSLVSPAVKL-VLKQSQCANVRNTTVLSGLTPLSIILKRHYAEKQIFERTKPH 308
M ++F +SL S +L L A+V NT + + T + + + +R K
Sbjct: 1 MLKLSF-RSLTSRLPRLSTLVVRGYASVANTGIEASNTSENNLNIQEQLNDNDKKRLKQI 59
Query: 309 CNVGTIGHVDHGKTTLTAAI---TKVLSDLNLAQKKGY--ADIDNAPEEKARGITINVA- 470
N+G H+D GKTT T + T + D++ + K A +D E+ +GITI A
Sbjct: 60 RNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAA 119
Query: 471 ----------HVEYQTEQR-------HYGHTDCPGHADYIKNMITGTAQMDGAILVVAAT 599
+E +Q+ + D PGH D+ + +DGA+LV+ A
Sbjct: 120 THCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAV 179
Query: 600 DGVMPQT 620
GV QT
Sbjct: 180 SGVQSQT 186
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 44.0 bits (99), Expect = 2e-05
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Frame = +3
Query: 312 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEY--- 482
N + HVDHGKTTL ++ ++ +D +E RGIT+ + +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 483 ---QTEQRHYGHT------DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQT 620
Q +++ D PGH D+ + + + DGA ++V A +GV QT
Sbjct: 81 VISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQT 135
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 40.7 bits (91), Expect = 2e-04
Identities = 35/104 (33%), Positives = 43/104 (41%)
Frame = +3
Query: 315 VGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQ 494
V +GHVDHGKTTL A K S + + G +K T V +
Sbjct: 174 VTLMGHVDHGKTTLLDAFRK--STIASTEHGGIT-------QKIGAFT-----VPFDKGS 219
Query: 495 RHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTRE 626
+ D PGH + G D +LVVA DGV PQT E
Sbjct: 220 KFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDGVKPQTVE 263
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 38.3 bits (85), Expect = 0.001
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Frame = +3
Query: 327 GHVDHGKTTLTAAITKVLS-DLNLAQKKG--YADIDNAPEEKARGIT---INVAHVEYQT 488
GH+ HGK+ L + D +++ Y D E+ I + +A + +
Sbjct: 147 GHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMSIKSTPLTLAVSDMKG 206
Query: 489 EQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQT 620
+ + D PGH D++ + A DG +LVV +GVM T
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINT 250
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 32.3 bits (70), Expect = 0.076
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Frame = +3
Query: 324 IGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNA---PEEKARGITINVAHVEYQTEQ 494
+GHVD GKT L + + S++ + G A P E + T V + + + +
Sbjct: 490 LGHVDTGKTKLLDNLRR--SNVQEGEAGGITQQIGATYFPIESIKQKT-KVVNKKGKLQY 546
Query: 495 RHYGHT--DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAK 644
G D PGH + GT+ + AILV+ G+ PQT E + L +
Sbjct: 547 NIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVIDIMHGLEPQTIESIRLLR 598
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 339 DQHVRLCQHCNGALYVQRFVFLHN 268
D H+R+ G Y++RFV HN
Sbjct: 475 DYHIRITFLAKGTEYIERFVKAHN 498
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 300 KPHCNVGTIGHVDHGKTTLTAAITKVL 380
KP +G +G GK+TLT A+ +++
Sbjct: 1249 KPQEKIGIVGRTGAGKSTLTLALFRLI 1275
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 513 DCPGHADYIKNMITGTAQ 566
D HADY K MITG A+
Sbjct: 715 DMHSHADYFKEMITGYAK 732
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 597 TDGVMPQTREHLLLAKQIGIQHVGGVHK 680
T+ + P H ++ K I +Q +GGVHK
Sbjct: 431 TNSLAPSVYGHEIIKKGILLQLMGGVHK 458
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 288 FERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADI 422
F+ K C +GHVD + L A ++ ++ L KKG+ +I
Sbjct: 156 FQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNI 200
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = -2
Query: 133 MLNELFNTKRC*ILNFQKFRLIFVWIFYNKYIHLFFR 23
+L+ + +K C L+ K L+F+ ++ +Y++LF+R
Sbjct: 19 LLHRMKKSKTCSGLSL-KSHLLFLLVYVTRYLNLFWR 54
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 432 PEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMIT 554
PE K R IN A +YQ E G T ++ + N+IT
Sbjct: 311 PEIKVR---INAALAKYQAELHSLGDTPVGDNSSIVLNLIT 348
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 354 LTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRHYG 506
+ A IT S + L I N+ +K + N++H + T RH+G
Sbjct: 529 ILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHFG 579
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,491
Number of Sequences: 5004
Number of extensions: 64718
Number of successful extensions: 208
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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