Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31061
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 69 3e-12
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 56 2e-08
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 55 7e-08
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 54 9e-08
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 53 3e-07
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 47 1e-05
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 47 1e-05
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 45 8e-05
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14) 37 0.015
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 33 0.19
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 31 0.76
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 30 2.3
SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25) 29 3.0
SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5) 29 4.0
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1) 29 4.0
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 29 4.0
SB_37376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024) 28 9.3
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Frame = +3
Query: 420 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAAT 599
+D EE+ +G T+ V + T+ +H+ D PGH ++ NMI+G Q D +LV++A
Sbjct: 197 LDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISAR 256
Query: 600 DGVMP-------QTREHLLLAKQIGIQHV 665
G QTREH +LAK G++H+
Sbjct: 257 KGEFETGFERGGQTREHAMLAKTAGVKHL 285
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Frame = +3
Query: 459 INVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMP-------Q 617
++V +QT+ + D PGH D+I NMITG AQ D AILVV A G Q
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 618 TREHLLLAKQIGI 656
TREH +L + +G+
Sbjct: 61 TREHAILVRSLGV 73
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 54.8 bits (126), Expect = 7e-08
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +3
Query: 321 TIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRH 500
TIGHV HGK+T + K LS + + K E R ITI + + +
Sbjct: 27 TIGHVAHGKST----VVKALSGVQTVRFKN---------ELERNITIKLGYANAKV---- 69
Query: 501 YGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV-MPQTREHLLLAKQIGIQHV 665
DCPGH + M+ G A MD A+L++A + PQT EHL + + ++H+
Sbjct: 70 ----DCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHI 121
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 54.4 bits (125), Expect = 9e-08
Identities = 24/50 (48%), Positives = 35/50 (70%)
Frame = +3
Query: 420 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQM 569
+D E+ RGITI++A +++T + + D PGH D+IKNMITGT+QM
Sbjct: 12 LDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQM 61
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 52.8 bits (121), Expect = 3e-07
Identities = 37/122 (30%), Positives = 54/122 (44%)
Frame = +3
Query: 315 VGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQ 494
V +GHVDHGKT+L I N E ++ GIT ++ +
Sbjct: 94 VTVMGHVDHGKTSLLDYIRNA----------------NVIEGESGGITQHIGAYSVKVGD 137
Query: 495 RHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVGGV 674
+ D PGH + G D I+VVAA D VMPQT+E + A+ G+ + +
Sbjct: 138 QKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAI 197
Query: 675 HK 680
+K
Sbjct: 198 NK 199
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Frame = +3
Query: 312 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQT- 488
N+G +GHVD GKT+L A++ S A D P+ + RGIT+++ +Q
Sbjct: 37 NIGVLGHVDSGKTSLAKALSTTAST---------ASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 489 ---EQRHYGH---------TDCPGHADYIKNMITGTAQMDG 575
R G DCPGHA IK +I G AQ+ G
Sbjct: 88 LPEHLRSAGSEHDLLQMTLVDCPGHASLIKTII-GGAQIIG 127
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Frame = +3
Query: 318 GTIGHVDHGKTTLT-------AAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHV 476
G I H D GKTTLT AI + + + KKG A D E+ RGI++ + +
Sbjct: 14 GIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKG-ATSDFMEIERQRGISVATSVL 72
Query: 477 EYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGI 656
+ + D PGH D+ ++ +D I+V+ GV QT + + + + I
Sbjct: 73 AFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQTEKLVEVCRMRNI 132
Query: 657 QHVGGVHK 680
+ ++K
Sbjct: 133 PMIVFINK 140
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 44.8 bits (101), Expect = 8e-05
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 18/121 (14%)
Frame = +3
Query: 312 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHV----- 476
N+ I HVDHGK+TLT ++ + A+ D +E+ R ITI +
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTAISLYYE 79
Query: 477 ------EYQTEQRH-------YGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 617
EY T+ + D PGH D+ + DGA++VV GV Q
Sbjct: 80 LPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ 139
Query: 618 T 620
T
Sbjct: 140 T 140
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 42.3 bits (95), Expect = 4e-04
Identities = 43/131 (32%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = +3
Query: 294 RTKPHCNVGTI-GHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINV- 467
R P V TI GHVDHGKTTL A+ N + G +A GIT ++
Sbjct: 23 RLMPRPPVVTIMGHVDHGKTTLLDALR------NSSVAAG----------EAGGITQHIG 66
Query: 468 AHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQ 647
A + D PGHA + G D +LVVAA DGV QT E + A
Sbjct: 67 AFLVKLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMH 126
Query: 648 IGIQHVGGVHK 680
+ + ++K
Sbjct: 127 AKVPLIVAINK 137
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 41.9 bits (94), Expect = 5e-04
Identities = 30/110 (27%), Positives = 45/110 (40%)
Frame = +3
Query: 312 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 491
N + HVDHGK+TL + +V ++ + +D E+ RGIT+
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNKQV-LDKLQVERERGITVK--------- 1992
Query: 492 QRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLA 641
GH D+ + A G +L+V A GV QT + LA
Sbjct: 1993 --------AQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLA 2034
>SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14)
Length = 239
Score = 37.1 bits (82), Expect = 0.015
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 6/178 (3%)
Frame = +3
Query: 114 LKSSFNMASITFVKSLVSPAVKLVLKQSQCANVRNTTVLSGLTPLSIILKRHYAEKQIFE 293
L F+ A + +S+++P ++ C + PL++ Y ++ +
Sbjct: 72 LSGQFSKAFVALFQSVMTPTLR-------CTPLITCLSSDARLPLAMSHTGKYTDQPLMT 124
Query: 294 RTK--PHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPE-EKARGITIN 464
PH N G +G V +G +A K+L YA NAP + G+
Sbjct: 125 PASNDPHWNCGEMGDVQNGVCAQGSA-KKIL----------YAWAGNAPSLDLPEGVAFK 173
Query: 465 VAH---VEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREH 629
V V+Y Q HYGH D + + ++TG + +G +++ D PQ H
Sbjct: 174 VGQDSDVKYLVLQVHYGHVD-----KFFRTVMTGYRERNGDRVLIGKGDPQKPQVWTH 226
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 513 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQ 647
D PGH + G++ D AILVV G+ PQT E + L K+
Sbjct: 684 DTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQTIESINLLKK 728
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +2
Query: 473 CRIPNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCYISSSCN*WCNATNTRTF----TTC 640
C P++T A W H P + H + N WC+ + + WC+ T T+ T
Sbjct: 406 CGHPSKTHANWCH--PTKTQANWCHPTKTQAN-WCHPTKTQANWCHPTKTQANLCHPTKT 462
Query: 641 QTDWY 655
Q +WY
Sbjct: 463 QANWY 467
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 482 PNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCYISSSCN*WCNATNTR 625
P +T+A W H P + H + +N WC+ + + WC TNT+
Sbjct: 29 PYKTQANWCH--PTKTQANLNHPIKIQSN-WCHPNKTQANWCYPTNTQ 73
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 31.5 bits (68), Expect = 0.76
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +2
Query: 173 CEISSEAKPVCKCTKHNSPVRIDS 244
C++S+EAKP + +++ SPVR+D+
Sbjct: 1953 CKLSAEAKPTFEWSRNGSPVRLDN 1976
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 294 RTKPHCNVGTIGHVDHGKTTLT 359
+ K H N+ IGHVD GK+T T
Sbjct: 3 KEKIHINIVVIGHVDSGKSTTT 24
>SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25)
Length = 506
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 522 GHADYIKNMITGTAQMDGAILVVAAT 599
GHADYI +MIT TA +G++ V +A+
Sbjct: 434 GHADYISHMITTTAD-NGSVTVWSAS 458
>SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 369 TKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 491
T +L D + +K Y +D++ EKA GI ++ +H E T+
Sbjct: 97 TYILLDDSHGEKTAYILLDDSHAEKATGILLDDSHAEKATD 137
>SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)
Length = 293
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 515 LPRSC*LH*EHDYRHSTNGWCYISSSCN 598
L RSC H D H + GWC ++ SCN
Sbjct: 37 LARSCNGH--TDLHHCSIGWCILARSCN 62
>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
Length = 284
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 456 TINVAHVEYQTEQRHYGHTDCPGHADY 536
T+ H Y T H HT CP H Y
Sbjct: 148 TLRTTHTTYATHTVHTRHTACPTHYTY 174
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 482 PNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCYISSSCN*WCNATNTR 625
P +T+A W H P + H + N WC+ + + WC+ T T+
Sbjct: 264 PTKTQANWYH--PTKTQANLNHPIKTQAN-WCHPNKTQANWCHPTKTQ 308
>SB_37376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +3
Query: 108 LVLKSSFNMASITFVKS-LVSPAVKLVLKQSQCANVRNTTVLSGLTPLSIILKRH----Y 272
L+L FN +++ L A + K+ C N + + LT L+ KRH Y
Sbjct: 172 LLLAGLFNKGALSSATMPLAISAFRDQFKEMSCINKLTSVCVIALTALTTTRKRHSDNEY 231
Query: 273 AEKQIFERTK 302
AEK++ R K
Sbjct: 232 AEKRVEYRYK 241
>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
Length = 180
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 482 PNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCYISSSCN*WCNATNTR 625
P + +A W H P + H + +N WC+ + + WC TNT+
Sbjct: 109 PTKIQANWYH--PTKTQANLNHPIKIQSN-WCHPNKTQANWCYPTNTQ 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,504,952
Number of Sequences: 59808
Number of extensions: 502892
Number of successful extensions: 1202
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -