Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31061
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    87   2e-19
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    85   5e-19
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    77   2e-16
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    63   3e-12
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    50   3e-08
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    37   2e-04
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.3  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.3  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 86.6 bits (205), Expect = 2e-19
 Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 23/152 (15%)
 Frame = +3

Query: 294 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKG-----YADI-DN 428
           + K H N+  IGHVD GK+T T  +      ++          AQ+ G     YA + D 
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62

Query: 429 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 608
              E+ RGITI++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA  G 
Sbjct: 63  LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122

Query: 609 MP-------QTREHLLLAKQIGI-QHVGGVHK 680
                    QTREH LLA  +G+ Q + GV+K
Sbjct: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 85.4 bits (202), Expect = 5e-19
 Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 23/152 (15%)
 Frame = +3

Query: 294 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKG-----YADI-DN 428
           + K H N+  IGHVD GK+T T  +      ++          AQ+ G     YA + D 
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62

Query: 429 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 608
              E+ RGITI++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA  G 
Sbjct: 63  LKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGE 122

Query: 609 MP-------QTREHLLLAKQIGI-QHVGGVHK 680
                    QTREH LLA  +G+ Q + GV+K
Sbjct: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 77.0 bits (181), Expect = 2e-16
 Identities = 43/95 (45%), Positives = 60/95 (63%), Gaps = 8/95 (8%)
 Frame = +3

Query: 420 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAAT 599
           +D    E+ RGITI++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA 
Sbjct: 3   LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 62

Query: 600 DGVMP-------QTREHLLLAKQIGI-QHVGGVHK 680
            G          QTREH LLA  +G+ Q + GV+K
Sbjct: 63  TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 97


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 62.9 bits (146), Expect = 3e-12
 Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 8/81 (9%)
 Frame = +3

Query: 462 NVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMP-------QT 620
           ++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA  G          QT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 621 REHLLLAKQIGI-QHVGGVHK 680
           REH LLA  +G+ Q + GV+K
Sbjct: 61  REHALLAFTLGVKQLIVGVNK 81


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 49.6 bits (113), Expect = 3e-08
 Identities = 42/127 (33%), Positives = 59/127 (46%)
 Frame = +3

Query: 300 KPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVE 479
           K H  V  +GHVDHGKTTL  A    L + ++A K  +  I            I    V 
Sbjct: 143 KRHPIVTIMGHVDHGKTTLLDA----LRNTSIA-KSEFGGITQC---------IGAFDVT 188

Query: 480 YQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQ 659
            ++ +R     D PGHA +I     G    D  +LVVAA DGV  QT + + +AK   + 
Sbjct: 189 LESGER-VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSIEMAKDAKVP 247

Query: 660 HVGGVHK 680
            +  ++K
Sbjct: 248 IIVAINK 254


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 312 NVGTIGHVDHGKTTLTAAITKV--LSDLNLAQKKGYADIDNAPEEKARG 452
           N+GTIGHV HGK+T+  AI+ V  +   N  ++     +D   E+  RG
Sbjct: 44  NIGTIGHVAHGKSTIVKAISGVQTVRFKNELERNITIKLDTRAEDSTRG 92


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 34  NECTYCKISKQKLIGISENLI 96
           N C YC++ K   +G+S + +
Sbjct: 118 NRCQYCRLKKCIAVGMSRDAV 138


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 542 EHDYRHSTNGWCYISSSC 595
           E DY    N W YI S C
Sbjct: 298 ESDYYPDLNEWLYILSGC 315


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 34  NECTYCKISKQKLIGISEN 90
           N C YC++ K   +G+S +
Sbjct: 69  NRCQYCRLKKCIAVGMSRD 87


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 207 NVRNTTVLSGLTPLSIILK 263
           + R TT+ + +TPLS+ LK
Sbjct: 328 SARPTTIETRVTPLSLSLK 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,717
Number of Sequences: 438
Number of extensions: 4448
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)