Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31060
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.41 
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.9  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   5.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 383  RPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPNLRCRIYR 562
            +PS+  P +  PS   P + +PS+  P + +PS   P +  P    P +  P+    + +
Sbjct: 1144 KPSVAAPPVPAPS-GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202

Query: 563  PSV 571
            PSV
Sbjct: 1203 PSV 1205



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 386  PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPNLRCRIYRP 565
            PS   PS+  PS   P +  PS   P +  PS+  P +  P +  P +  P+    + +P
Sbjct: 1069 PSSEIPSIPAPS-GAPPVPAPS-GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126

Query: 566  SV 571
            SV
Sbjct: 1127 SV 1128


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +2

Query: 383 RPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPNLRCRIYR 562
           +PS  +PS   PS        PS   P+L S    RPS+       P   RPN+  ++  
Sbjct: 94  KPSYSQPSYSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPP 153

Query: 563 PSVHCSS 583
           P  + SS
Sbjct: 154 PPSYSSS 160


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/76 (25%), Positives = 30/76 (39%)
 Frame = +2

Query: 476 PSIHRPSIYCPGLRCPYIRRPNLRCRIYRPSVHCSSRDHRCPCCSSIHCSSRDYRRRGRP 655
           P+  + S  CP LR      PN   +  R  ++     +    C++I+    DY  R   
Sbjct: 67  PNNCKGSFLCPMLRGENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYECEGDYPARTGN 126

Query: 656 SIYYPSCLLNLRSFSC 703
            I      LNL+  +C
Sbjct: 127 EIIDEFDQLNLQCSAC 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,132
Number of Sequences: 5004
Number of extensions: 20824
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)