Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31060
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568...    31   1.3  
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979...    30   1.7  
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79...    29   3.1  
02_05_0808 - 31883413-31883813,31883903-31884377                       29   3.1  
01_06_0252 + 27889652-27892450                                         29   4.0  
05_04_0189 - 18911654-18913207,18913310-18913528,18914034-189143...    29   5.3  
03_06_0468 + 34153425-34153823                                         28   7.1  

>06_03_0272 +
           19053455-19053587,19054665-19056627,19056827-19056887,
           19056975-19057198,19057573-19057642,19058453-19058515
          Length = 837

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
 Frame = +2

Query: 362 VHCHGLHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLR---SPSIH-RPSIYCPGLRCPYI 529
           +H +G H    H PSL+  S + P +H P   R NL     P  H R S Y  G   P  
Sbjct: 263 LHWNGSH----HSPSLNVQSPNIPQVHAPLPTRQNLHGYAEPIPHARASSYHAGAGYPCR 318

Query: 530 RRPNLRCRIYRP----SVHCSSRDHRCPCCSSIHCSSRDY 637
              N     + P    S H     H+ P CS  +C  R++
Sbjct: 319 NVDNFFFGHHDPDPLLSCHHEGLYHQ-PVCSCFNCYHREF 357


>08_02_1547 + 27795664-27795674,27795743-27795892,27796182-27797906,
            27799447-27799546,27799657-27800268,27800399-27800521,
            27800905-27801039,27801108-27801209,27801716-27801778,
            27801854-27802045,27802121-27802258,27802632-27802694,
            27803068-27803466
          Length = 1270

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 374  GLHRPSLHR-PSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPNLR 547
            GL+R   +R  S    ++  P   RPSL  P   SP   RPS+  P    P+  RP +R
Sbjct: 1164 GLYRREANRRQSALDFTVRTPRERRPSLLLPLPWSPRKRRPSLLLPPPWSPWKHRPGVR 1222


>08_01_0107 -
           789217-789984,790070-790219,790303-790890,790968-791093
          Length = 543

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +2

Query: 383 RP-SLHRPSLHG-PSLHCPS--LHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPNLRC 550
           RP S   P  HG  S H  S  +HR   H P   SPS  RP I       P + R     
Sbjct: 354 RPFSYSTPRRHGNASYHASSSPMHRAHHHSPVTPSPSKARPPIQVRS-ASPRVERGGGGG 412

Query: 551 RIYRPSVHCSSRDH 592
             Y PS+H S R H
Sbjct: 413 GSYTPSLH-SHRHH 425


>02_05_0808 - 31883413-31883813,31883903-31884377
          Length = 291

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +2

Query: 362 VHCHGLHRPSLHRPSLHGPSLHCPSLHRP 448
           V  H LH   LHRP    PS H P  HRP
Sbjct: 33  VRPHQLHDALLHRPRRRRPSRHFPP-HRP 60



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 398 RPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRP 493
           R  L G  +    LH   LHRP  R PS H P
Sbjct: 25  RARLPGAGVRPHQLHDALLHRPRRRRPSRHFP 56


>01_06_0252 + 27889652-27892450
          Length = 932

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 371 HGLHRPSLHRPSLHGPSLHC 430
           H +  PSLH P LH   LHC
Sbjct: 280 HAVSFPSLHEPRLHVNQLHC 299


>05_04_0189 -
           18911654-18913207,18913310-18913528,18914034-18914367,
           18914425-18914592,18914633-18914724,18914814-18914848,
           18915377-18915441,18915565-18915669,18916373-18916434,
           18916732-18916860,18918050-18918184,18918336-18918457,
           18918808-18918965,18919215-18919372,18919447-18919780,
           18919853-18919978,18920213-18920443,18920520-18920692
          Length = 1399

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 587 DHRCPCCSSIHCSSRDYRRR--GRPSIYYPSCLLNLRSFS 700
           D RC CCSS +C   +++    G   + + S L+ + S +
Sbjct: 637 DARCKCCSSAYCKKANFKNLIIGATVLIFMSMLMRIPSIN 676


>03_06_0468 + 34153425-34153823
          Length = 132

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 377 LHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRP 538
           LHRP L R  +     H P+L  PS+ R  +++ S  R S++    R  Y  RP
Sbjct: 29  LHRPPLERMVVLAGDEHHPTLPLPSVIREKVKN-SGARSSLFDAARRLHYQCRP 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,550,934
Number of Sequences: 37544
Number of extensions: 173185
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)