Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31060
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 44 1e-04
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 34 0.12
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 33 0.21
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 31 0.84
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 30 1.9
At3g60290.1 68416.m06739 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 5.9
At4g14910.1 68417.m02291 imidazoleglycerol-phosphate dehydratase... 28 7.8
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +2
Query: 386 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPNLRCRIYRP 565
P ++ P +H P+L P ++ P +H+P L P +P++ P P +P L +Y P
Sbjct: 44 PPVYTPPVHKPTLP-PPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTP 102
Query: 566 SVH 574
V+
Sbjct: 103 PVY 105
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +2
Query: 362 VHCHGLHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPN 541
V+ +H+P+L P P+L P+ P ++P L +P ++ P +Y P L P +P
Sbjct: 60 VYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAP-VYTPPVYKPTLSPPVYTKPT 118
Query: 542 LRCRIYRPSV 571
L +++P++
Sbjct: 119 LLPPVFKPTL 128
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/70 (28%), Positives = 39/70 (55%)
Frame = +2
Query: 362 VHCHGLHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPN 541
V+ +++P+L P P+L P + +P+L P P++ P++Y P L P +P+
Sbjct: 99 VYTPPVYKPTLSPPVYTKPTL-LPPVFKPTLSPPVYTKPTLS-PTVYKPTLSPPVNNKPS 156
Query: 542 LRCRIYRPSV 571
L +Y+P++
Sbjct: 157 LSPPVYKPTL 166
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 401 PSLHGPSLHCPSLHRP-SLHRPNLRSPSIHRPSI 499
P LH P +HCP P S NLRSPS P I
Sbjct: 9 PRLHSPFIHCPINFTPSSFSARNLRSPSTSYPRI 42
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 386 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPN 541
PS L P + P + PS+ P + +PS+ PS+ P + P + PN
Sbjct: 32 PSPKPRPLPNPKVPSPKVPTPSVPSPYVPTPSVPSPSVPTPSVPSPSVPSPN 83
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 377 LHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCP 508
L P + P + PS+ P + PS+ P++ +PS+ PS+ P
Sbjct: 39 LPNPKVPSPKVPTPSVPSPYVPTPSVPSPSVPTPSVPSPSVPSP 82
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 362 VHCHGLHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGL--RCPYIRR 535
V+ H P +P++ P ++ P +++P+L P P+I P +Y P + P +
Sbjct: 75 VYKHTPSPPVYTKPTIP-PPVYTPPVYKPTLSPPVYTKPTI-PPPVYTPPVYKPTPVYTK 132
Query: 536 PNLRCRIYRPSVH 574
P + +Y P V+
Sbjct: 133 PTIPPPVYTPPVY 145
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 386 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPS 496
P + P PS+ PS+ PS+ P++ +PS+ P+
Sbjct: 42 PKVPSPKYPSPSIPSPSVPTPSVPTPSVPTPSVPSPN 78
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 431 PSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPN 541
P + P P++ SPS+ PS+ P + P + PN
Sbjct: 42 PKVPSPKYPSPSIPSPSVPTPSVPTPSVPTPSVPSPN 78
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 401 PSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCP 508
P + P PS+ PS+ P++ +PS+ PS+ P
Sbjct: 42 PKVPSPKYPSPSIPSPSVPTPSVPTPSVPTPSVPSP 77
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 416 PSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCP 523
P + P PS+ P++ +PS+ PS+ P + P
Sbjct: 42 PKVPSPKYPSPSIPSPSVPTPSVPTPSVPTPSVPSP 77
>At3g60290.1 68416.m06739 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavonol synthase 1
[SP|Q96330], gibberellin 20-oxidase [GI:9791186];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 316
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/93 (21%), Positives = 38/93 (40%)
Frame = +2
Query: 383 RPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIRRPNLRCRIYR 562
RP L PS+ +++ P + LH P LR IH + C G + + + +
Sbjct: 38 RPMLG-PSIGTSTINLPVIDLSFLHDPLLRLCVIHEIELACKGFGFFQVINHGISSAVVK 96
Query: 563 PSVHCSSRDHRCPCCSSIHCSSRDYRRRGRPSI 661
+ ++R P +H S +++ R +
Sbjct: 97 DAQDSATRFFDLPADEKMHLVSDNFQEPVREKV 129
>At4g14910.1 68417.m02291 imidazoleglycerol-phosphate dehydratase,
putative similar to SP|P34047
Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19)
(IGPD 1) {Arabidopsis thaliana}; contains Pfam profile
PF00475: imidazoleglycerol-phosphate dehydratase
Length = 272
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 377 LHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYC 505
L RP+L +L P S H P + S S HRPSI C
Sbjct: 11 LLRPNLSSRALLPPRTSIASSHPPPPRFLVMNSQSQHRPSISC 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,234,295
Number of Sequences: 28952
Number of extensions: 121431
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -