Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31056
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    69   3e-13
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    29   0.45 
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    27   1.0  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   1.8  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   2.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   4.2  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   4.2  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    25   5.6  
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    25   7.3  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   7.3  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   7.3  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    24   9.7  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 30/114 (26%), Positives = 62/114 (54%)
 Frame = +1

Query: 7   LTFEDIDRLTYMDMVISEAMRKYPPIGFIQRLCTKDAILPSNNLKISKDTVTVVPILAIH 186
           L+ + ++++TY   V+ E +R  PP+  +     K A   + +  + KD + +  +    
Sbjct: 361 LSLDLMEKMTYTRAVVKECLRLRPPVLMVPYR-VKKAFPITPDYTVPKDAMVIPTLYGAL 419

Query: 187 RDERFYPNPDVFDPERFTPEKVKERNKFSYLAFGEGNRICIGVRFSRLQMKACI 348
            D + YP P+ F+P+R+ P  + E++  +++ FG G  +C+G R++   + ACI
Sbjct: 420 HDSKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAVNHLIACI 473


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = +1

Query: 130 NNLKISKDTVTVVPILAIHRDERFYPNPDVFDPERFTPEKVKERNKFSYLAFGEGNRICI 309
           N++  S+D+  +       +D     +   F   R  P       + + LAFG+G  +C+
Sbjct: 444 NSMSFSQDSQVLAIASRGKKDTLRLVHVPSFSVFRNWPTSATPLGRVTCLAFGKGGELCV 503

Query: 310 GVRFSRLQMKACITWLLRKYTLK 378
           G    R+ +     W L  Y LK
Sbjct: 504 GNEAGRVGL-----WKLAHYDLK 521


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 166 VPILAIHR-DERFYPNPDVFDPE--RFTPEKVKERNK 267
           +P++ +H  DE+    PDVF PE    + E V E N+
Sbjct: 114 IPVIGLHMSDEKLLEPPDVFTPEYISISEEGVNEFNE 150


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 181 IHRDERFYPNPDVFDPERFTPEKVKERNKFSYLAFGEGNRIC 306
           +HR  RF+ N   F P     EKV + NK   LA  E  ++C
Sbjct: 4   VHR--RFFQNEKAFTPAG-KHEKVADGNKHETLATSEYPKVC 42


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 294 SLTERQVTKLVSFFNFFWSEPFRIENI 214
           +LTE Q  +L+ FF F+ + PF ++ +
Sbjct: 11  TLTELQQLRLLYFFCFYHAAPFNVKTL 37


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 187  RDERFYPNPDVFDPERFTPEKVKERNKFSYLAFGEGN 297
            RD  FYP+ + +DP      K ++ + F Y  F +G+
Sbjct: 1870 RDVEFYPSQNGYDPRWLIAGK-EDEDSFLYGLFDKGS 1905


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 37  YMDMVISEAMRKYPPI 84
           Y  MV  EA RKYPP+
Sbjct: 123 YNQMVCLEAYRKYPPV 138


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 22  IDRLTYMDMVISEAMRKYPP 81
           I++LT+ D  + EA+R +PP
Sbjct: 384 IEKLTFQDDCLREAVRGHPP 403


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 279 QVTKLVSFFNFFWSEPFRIENIWIG 205
           Q+T  ++F   FW+   R  ++W G
Sbjct: 6   QLTSFLTFHLMFWTSVARARSVWKG 30


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 214 DVFDPERFTPEKVKERNK 267
           D FDPE++  +KVK  N+
Sbjct: 188 DEFDPEKWDTKKVKSSNR 205


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 55  SEAMRKYPPIGFIQRLCTKDAILPSNNL 138
           + + R+ P I  ++ L +K   LPSNN+
Sbjct: 127 TSSWRELPSIPTLEELTSKSVELPSNNI 154


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 230 NGSLQKKLKKETSLVTWRSVRETG 301
           NGSL++ L+K +S++      ETG
Sbjct: 148 NGSLKESLRKYSSIIAVNIFSETG 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,561
Number of Sequences: 5004
Number of extensions: 42564
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)