Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31056
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...   107   8e-26
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    98   5e-23
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   6.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   6.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.5  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score =  107 bits (256), Expect = 8e-26
 Identities = 48/124 (38%), Positives = 67/124 (54%)
 Frame = +1

Query: 7   LTFEDIDRLTYMDMVISEAMRKYPPIGFIQRLCTKDAILPSNNLKISKDTVTVVPILAIH 186
           L ++DI  + Y+D V  E +R YPP   + R    D       + I K+    +P  AIH
Sbjct: 345 LKYDDIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITIPKEMKIWIPAFAIH 404

Query: 187 RDERFYPNPDVFDPERFTPEKVKERNKFSYLAFGEGNRICIGVRFSRLQMKACITWLLRK 366
           RD   YPNPD FDPERF  + +  R+   YL FG+G R CIG RF+  Q K  +  +LR 
Sbjct: 405 RDSAIYPNPDSFDPERFDQDAMASRHPMHYLPFGDGPRNCIGARFAVYQTKVGLITILRN 464

Query: 367 YTLK 378
           + ++
Sbjct: 465 HKVE 468


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 97.9 bits (233), Expect = 5e-23
 Identities = 41/123 (33%), Positives = 69/123 (56%)
 Frame = +1

Query: 10  TFEDIDRLTYMDMVISEAMRKYPPIGFIQRLCTKDAILPSNNLKISKDTVTVVPILAIHR 189
           TF+D   + Y++  + E +R YPP+  I R    D  L S +  I      V+    +HR
Sbjct: 390 TFQDTLEMKYLERCLLETLRMYPPVPLIAREIKTDLKLASGDYTIPAGCTVVIGTFKLHR 449

Query: 190 DERFYPNPDVFDPERFTPEKVKERNKFSYLAFGEGNRICIGVRFSRLQMKACITWLLRKY 369
               YPNPDVFDP+ F PEK   R+ ++++ F  G R C+G +++ L++K  ++ +LR +
Sbjct: 450 QPHIYPNPDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCVGRKYAMLKLKIVLSTILRNF 509

Query: 370 TLK 378
            ++
Sbjct: 510 RVR 512


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 107 VQSLCMKPIG 78
           VQS+CMK IG
Sbjct: 29  VQSVCMKEIG 38


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 184 HRDERFYPNPDVFDPERFTPEKVKERNKFSYLAFGEGNR 300
           +++ER Y        ERF   + +ER+K S +     N+
Sbjct: 283 YKNEREYRKYRETSKERFRDRRERERSKESKIISSLSNK 321


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
          transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 98 LCMKPIGGYFLIASLITM 45
          LC K  GG FLI   +T+
Sbjct: 10 LCYKNGGGAFLIPYFLTL 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,452
Number of Sequences: 438
Number of extensions: 3208
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)