Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31055
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    30   0.24 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   2.9  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   6.8  
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...    25   6.8  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   9.0  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 346 LNIFGTETMQDADTAKWRWYSRS 414
           L+I GT T+ D    +W WYS S
Sbjct: 383 LDIIGTSTILDKSLLRWDWYSNS 405


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 454  LYLTHIVYLFSLSPTGCT 401
            +Y  H+VY+ SLSP  C+
Sbjct: 1399 VYAAHLVYILSLSPDVCS 1416


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +3

Query: 141 NSKSRIDYYGGM---VKTYQFTSAVYPPYGTSIKIAPVTTETEMNKETCLQVNS-TQDQL 308
           +SK  I + G     + T    S + P Y      +PV+ +TE      L   S  Q   
Sbjct: 49  SSKEEISWCGNQSTPIATKSHLSCINPQYVNPFDTSPVSVDTEFQDTYLLDAPSFAQPHF 108

Query: 309 QDIQSVLPDMTDFKYIRHRNNAGCRH 386
            + QSV  D T  + +  RN    RH
Sbjct: 109 SERQSV--DKTRSRCL-SRNRRRKRH 131


>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 51  QWSPVYTVKGLL 86
           QWSPVYT+K  L
Sbjct: 96  QWSPVYTMKSAL 107


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 81  LLNIPYAELHEPFYAWYDSKNSKSRIDY 164
           L + P +ELH     W+ SK S   + Y
Sbjct: 704 LSSSPLSELHPQLREWFSSKQSVYSLQY 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,659
Number of Sequences: 5004
Number of extensions: 50304
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)