Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31055
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 31 0.73
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 29 1.7
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 29 2.2
02_05_0942 + 32970537-32970581,32971059-32971113,32971300-329714... 29 2.2
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502 28 3.9
10_07_0152 + 13439178-13439517,13440072-13440229,13440431-134404... 28 3.9
09_04_0757 - 19963832-19964866 28 5.2
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 27 6.8
05_04_0142 - 18372751-18373338 27 9.0
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 27 9.0
>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 30.7 bits (66), Expect = 0.73
Identities = 19/79 (24%), Positives = 31/79 (39%)
Frame = +3
Query: 174 MVKTYQFTSAVYPPYGTSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKY 353
+VK F + P Y T KI + N E C ++ ++ + Q P M
Sbjct: 1001 LVKCSSFNAKGIPKYRTGRKIVAFSATRSHNDEACGSEAASDNRQEMNQKNEPKMRSSSR 1060
Query: 354 IRHRNNAGCRHGQMEMVQP 410
+ +NAG R + + P
Sbjct: 1061 VAAMSNAGRRRRSLTSIAP 1079
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 164 LWRYGQDLPVHVSGLPTLRYFYKDRAGHNGNRDEQGDVPASQFDARSAAR 313
L+ + + L V LR Y+ R H N+D +GD P+S R+A R
Sbjct: 487 LYTWEKKLYKEVKAGERLRIDYEKRLNHLRNQDVKGDEPSSVDKTRAALR 536
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -2
Query: 412 TGCTISIWPCRHPALFLCRIYLKSVMSGSTDWMSCS*SCVELTCRH-VSLFISVSVVT 242
T CT+S C H C +YL + S ST S CRH + F+ ++ T
Sbjct: 327 TECTVSAEGCGHEFCTKCALYLCATASSSTSIRGVPGSIPCPLCRHTIVSFVRLTSTT 384
>02_05_0942 +
32970537-32970581,32971059-32971113,32971300-32971417,
32971567-32971615,32971637-32971723,32971890-32971970,
32972074-32972181,32972432-32972503,32973218-32973250
Length = 215
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +3
Query: 96 YAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAPVTT 251
+ E P +Y++K+ +ID + + ++ A++ PY + ++ VTT
Sbjct: 162 FVESSLPVIEYYNAKDKVKKIDAAKPIPEVFEDVKAIFAPYAPNALLSGVTT 213
>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
Length = 1385
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 195 TSAVYPPYGTSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQ 320
T+A P GTS +A TT T +K+ ++ +LQD+Q
Sbjct: 412 TTAPSPGVGTSHDVATATTTTTFDKDQIEEMIYIHMELQDMQ 453
>10_07_0152 +
13439178-13439517,13440072-13440229,13440431-13440477,
13441115-13441178,13441600-13442237,13442328-13442562
Length = 493
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 33 DKGSPPQWSPVYTVKGLLNIPYAELHEP 116
D GS +W P+ G +N P LH P
Sbjct: 391 DSGSTSEWRPLIKKYGYVNCPTVRLHIP 418
>09_04_0757 - 19963832-19964866
Length = 344
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 230 KDRAGHNGNRDEQGDVPASQFDARSAARHPISATGHDRF 346
+ RA H DVPAS A +AA +P S HD F
Sbjct: 59 RPRAAHLSGTASSTDVPASNGSAAAAANYPRSPP-HDLF 96
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 81 LLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAPVT 248
+L + L PF+ W ++ SR+ Y G M+ + F A + S+KI T
Sbjct: 426 MLKATASRLFGPFFDWIETWEMISRLKYLGTMLFLHNFQQA----FTWSLKIVTAT 477
>05_04_0142 - 18372751-18373338
Length = 195
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 236 RAGHNGNRDEQGDVPASQFDARSAARHPISATGHDRF*IYSAQKQCRMPTRPNGDG 403
R+G R+ GD + +A +AAR P +A + ++CR+ P+ +G
Sbjct: 109 RSGRRSRRERPGDDGGGEDNAGAAARAPAAA-----WCCVCPDEECRLEANPSANG 159
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 270 ETCLQVNSTQDQLQDIQSVLPDMTDFKYIRHRNNAGCRHGQMEMVQ 407
E+C+Q+NS D L I +VL + A C E+ Q
Sbjct: 2748 ESCMQLNSKDDALSLISAVLESEVPLTVVPEPTRAQCSELDREVSQ 2793
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,652
Number of Sequences: 37544
Number of extensions: 341975
Number of successful extensions: 851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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