Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31055
(518 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 1e-28
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 7e-19
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40) 69 2e-12
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23) 37 0.009
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 28 4.0
SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79) 28 5.3
SB_31052| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-14) 28 5.3
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_22092| Best HMM Match : WD40 (HMM E-Value=7.2e-07) 27 7.0
SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13) 27 9.3
SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 123 bits (296), Expect = 1e-28
Identities = 61/158 (38%), Positives = 85/158 (53%)
Frame = +3
Query: 42 SPPQWSPVYTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYG 221
+PP W YT+ G+L +PYAE+ EPF AW+D +SRIDYYGGM T+Q + G
Sbjct: 337 TPPTWPQEYTLTGVLRLPYAEIEEPFQAWFDGGRKRSRIDYYGGMDSTFQRGDIL--TAG 394
Query: 222 TSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIRHRNNAGCRHGQMEM 401
+ +I P++TET++N +C Q N T QSVLPD+ F ++ + + E
Sbjct: 395 ANFRICPMSTETKLNVRSCFQTNGTSASPVGPQSVLPDLAKFSFVGNSTYGDVKCSIWEY 454
Query: 402 VQPVGDKLNKYTMWVKYKKTLKGDSVPIPVRYEMKGLN 515
VG K NKYTM+ P P+ YEM G +
Sbjct: 455 KLTVGHKRNKYTMYTSM------HDPPAPIHYEMLGFD 486
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 90.6 bits (215), Expect = 7e-19
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Frame = +3
Query: 36 KGSPPQWSPV-----YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTS 200
+ +PP P Y G L +P++++ EPF W+ +++++SRIDYY G +T+Q
Sbjct: 37 RSAPPPMKPFHFPRNYHATGKLQLPHSKIEEPFEVWFSAQHNRSRIDYYYGTDRTFQ--R 94
Query: 201 AVYPPYGTSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIRHRNNAGC 380
A P+G + KI P+ T+ + C + T+ +Q ++P+MTDFK+ + G
Sbjct: 95 ADVGPHGEAFKIVPIYTDEKGGYIGCWHLEGTERTPIVVQPIVPNMTDFKFAGYEVYHGA 154
Query: 381 RHGQMEMVQPVGDKLNKYTMWVKYKKTLKGDSVPIPVRYEMKGLNS 518
+ E +N +T+WV P PVRYEMKG ++
Sbjct: 155 STAKWEYRYLAFGLMNAHTIWVTTA------DPPRPVRYEMKGYDN 194
>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
Length = 1198
Score = 69.3 bits (162), Expect = 2e-12
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 5/156 (3%)
Frame = +3
Query: 66 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAPV 245
Y G L++PY + EPF +WY + SRIDYY GM KT+Q + YG +K+ P
Sbjct: 1020 YHAIGTLHLPYDNIREPFESWYARDYNMSRIDYYYGMDKTFQRGDLM--DYGVLVKVVPA 1077
Query: 246 --TTETEMNKET--CLQVNSTQDQLQDIQSVLP-DMTDFKYIRHRNNAGCRHGQMEMVQP 410
+ +++K T C + Q QSVLP + FK+I +G + +
Sbjct: 1078 HWGRDEDLDKNTISCWYRPGFRWSQQRGQSVLPAHLEHFKFIGEEIRSGMPTFKYQRNTT 1137
Query: 411 VGDKLNKYTMWVKYKKTLKGDSVPIPVRYEMKGLNS 518
+ K N YT W+ K + P+RY M G ++
Sbjct: 1138 IFHKKNSYTFWMTKAKPHR------PLRYVMHGYDT 1167
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +3
Query: 66 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMV 179
Y V+G L++PY E+ EPF AWY + SRIDYY G V
Sbjct: 878 YRVQGTLSLPYDEIVEPFEAWYAGDYNMSRIDYYYGKV 915
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 68.5 bits (160), Expect = 3e-12
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +3
Query: 66 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAPV 245
Y G+L++PY ++ EPF WY + SRIDYYGGM +TYQ YG + KI P
Sbjct: 39 YHATGVLSLPYGDIKEPFEVWYSGLHGMSRIDYYGGMDRTYQ--RGDLGKYGYACKIVPE 96
Query: 246 TTE-TEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIR 359
+E T + CL + QS++P FK +R
Sbjct: 97 FSELTGRTFKGCLHRRGNSNFQIKAQSIIPSPKFFKVMR 135
Score = 55.6 bits (128), Expect = 2e-08
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +3
Query: 66 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 191
Y G+L +P +E++EPF W+ +++SRIDYYGG VKTYQ
Sbjct: 902 YHATGVLRLPTSEVNEPFEIWFSRPHNQSRIDYYGGDVKTYQ 943
>SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 47.6 bits (108), Expect = 6e-06
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +3
Query: 66 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGG 173
Y V+G L++PY E+ EPF AWY + SRIDYY G
Sbjct: 72 YRVQGTLSLPYDEIVEPFEAWYAGDYNMSRIDYYYG 107
>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
Length = 936
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 476 RVPFQSLLVFNPHRVFV*LIADRLYHLHLAVS-ASCIVSVPNIF 348
++ F S +VF PHR ++ L+ DRLYHLH+ + S N+F
Sbjct: 525 QIVFPSHIVFTPHRSYL-LLTDRLYHLHIVFPLTDRLYSSQNVF 567
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 32.7 bits (71), Expect = 0.19
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = -2
Query: 451 YLTHIVYLFSLSPTGCTISIWPCRHPALFLCR-----IYLKSVMSG-STDWMSCS*SCVE 290
Y+ + +++ + CT+ + CR A LCR ++ VMS T +MS CV
Sbjct: 399 YVASVYHVYVVMSPVCTMFMSLCRQCAPCLCRHVASVYHVYVVMSPVCTMFMSSCRQCVP 458
Query: 289 LTCRHVSLFISVSVVTGAI 233
CRHV+ V VV +
Sbjct: 459 CLCRHVASVYHVYVVMSPV 477
Score = 31.9 bits (69), Expect = 0.33
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -2
Query: 451 YLTHIVYLFSLSPTGCTISIWPCRHPALFLCR-----IYLKSVMSG-STDWMSCS*SCVE 290
Y+ + +++ + CT+ + CR A LCR ++ VMS T +MS C
Sbjct: 367 YVASVYHVYVVMSPVCTMFMSSCRQCAPCLCRYVASVYHVYVVMSPVCTMFMSLCRQCAP 426
Query: 289 LTCRHVSLFISVSVVTGAI 233
CRHV+ V VV +
Sbjct: 427 CLCRHVASVYHVYVVMSPV 445
Score = 30.7 bits (66), Expect = 0.75
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = -2
Query: 442 HIVYLFSLSPTGCTISIWPCRHPALFLCRI-----YLKSVMSG-STDWMSCS*SCVELTC 281
H VY+ +SP CT+ + CR A LCR ++ VMS T +MS CV C
Sbjct: 532 HHVYVV-MSPV-CTMFMSSCRQCATCLCRYVASVQHVYVVMSPVCTMFMSLCHQCVPCLC 589
Query: 280 RHVSLFISVSVVTGAI 233
R+V+ V VV +
Sbjct: 590 RYVASVHHVYVVMSPV 605
Score = 29.5 bits (63), Expect = 1.7
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = -2
Query: 442 HIVYLFSLSPTGCTISIWPCRHPALFLCRI-----YLKSVMSG-STDWMSCS*SCVELTC 281
H VY+ +SP CT+ + CR A LCR ++ VMS T +MS C C
Sbjct: 500 HHVYVV-MSPV-CTLFMSSCRQCATCLCRYVASVHHVYVVMSPVCTMFMSSCRQCATCLC 557
Query: 280 RHVSLFISVSVVTGAI 233
R+V+ V VV +
Sbjct: 558 RYVASVQHVYVVMSPV 573
Score = 27.9 bits (59), Expect = 5.3
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = -2
Query: 442 HIVYLFSLSPTGCTISIWPCRHPALFLCRI-----YLKSVMSG-STDWMSCS*SCVELTC 281
H VY+ +SP CT+ + CR A LCR ++ VMS T +MS CV C
Sbjct: 308 HHVYVV-MSPV-CTMFMSLCRQCATCLCRYVAIVHHVYVVMSPVCTMFMSLCRQCVPCLC 365
Query: 280 RHVSLFISVSVVTGAI 233
+V+ V VV +
Sbjct: 366 PYVASVYHVYVVMSPV 381
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -2
Query: 442 HIVYLFSLSPTGCTISIWPCRHPALFLCRIYLKSV 338
H VY+ +SP CT+ + PCR A LCR Y+ SV
Sbjct: 66 HHVYVV-MSPV-CTLFMSPCRQCAPCLCR-YVASV 97
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 30.7 bits (66), Expect = 0.75
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 231 KIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKY 353
K++PV T+ E ++ + Q +++DI ++ D+ D KY
Sbjct: 4087 KLSPVGTDVETIEQQMDDLKELQKEVEDIDELIADLNDQKY 4127
>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 138 KNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAPVTTETEMNKE 272
K S + + GG+ KT + V PP G K+ V +E+E K+
Sbjct: 400 KLSARKSNERGGVEKTRSKSEKVAPPKGHEAKVRTVKSESEAGKK 444
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 33 DKGSPPQWSPVYTVKGLLNI 92
DKGSPPQ+S + + +LNI
Sbjct: 451 DKGSPPQYSEITVIVKVLNI 470
>SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)
Length = 632
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 249 TETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIRHRNNAGCRHGQMEMVQPVGDKLN 428
T+ ++ L + + ++ L++I S LP + NN +M QP +N
Sbjct: 168 TQVVTKEDHQLHLETAKEFLEEIISNLPIKRE-----ENNNTDTHKANTQMEQPEQANIN 222
Query: 429 KYTMWVKYKKTLKGD--SVPIPVRYE 500
K + K +KG S PIP +E
Sbjct: 223 KSKSPARIAKPIKGGIRSPPIPKAFE 248
>SB_31052| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-14)
Length = 283
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 478 TESPFKVFLYLTHIVYLFSLSPTGCTISIWPCRHPAL 368
T +FL L H V L +S +WP RH L
Sbjct: 90 TREKINIFLALIHFVSLALISQDRMCAIVWPLRHRIL 126
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 93 PYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTS---AVYPPYGTSIKIA 239
PY+ +H P Y YD++ + YYG + Q + V PPY IA
Sbjct: 21 PYSSVHFPVYGQYDARQER----YYGPPLPRSQHPTRQDMVKPPYSYIALIA 68
>SB_22092| Best HMM Match : WD40 (HMM E-Value=7.2e-07)
Length = 338
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 153 RIDYYGGMVKTYQF-TSAVYPPYGTSIKIAPVTTETEMN 266
R + YG ++ + TS Y PYGTS++ +P T N
Sbjct: 293 RYNPYGTSLRYNPYGTSLRYNPYGTSLRYSPYGTSLRYN 331
>SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)
Length = 725
Score = 27.1 bits (57), Expect = 9.3
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +3
Query: 210 PPYGT--SIKIAPVTTETEM-----NKETCLQVNS-TQDQLQDIQSVLPDMTDFKYIRHR 365
PP T ++ ++P E M NK+ Q N ++Q Q +QS+L D + K +
Sbjct: 596 PPVDTFSALSLSPEVKEKLMRLEHENKKLKAQKNDENEEQTQLLQSILNDANERKDQLEK 655
Query: 366 NNAGCRHGQMEMVQPVGDKLNK 431
N MEM V D N+
Sbjct: 656 ENRSLNQRIMEMESEVDDLRNQ 677
>SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 435 TMWVKYKKTLKGDSVPIPVRYEMKG 509
T+ V+Y+ G S+ +PVRY+M G
Sbjct: 225 TLSVRYQMISNGRSLTLPVRYQMIG 249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,374,452
Number of Sequences: 59808
Number of extensions: 402710
Number of successful extensions: 1245
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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