Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31055
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.3  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   5.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 382 RHPALFLCRIYLKSVMSGSTDWMS 311
           RH   FL ++Y+  V+     W+S
Sbjct: 242 RHTGYFLIQVYVPCVLIVVLSWVS 265


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 22 LDMSIKGRHHNGVQY 66
          LD SIK + HNG  Y
Sbjct: 25 LDCSIKPKDHNGSIY 39


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 93  VYLGVPLLCILDSIVVATLY 34
           +YLG P++  L++++   LY
Sbjct: 320 MYLGTPVMPDLNALIATGLY 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,312
Number of Sequences: 438
Number of extensions: 3757
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)