Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31055
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61390.1 68418.m07702 exonuclease family protein contains exo...    33   0.15 
At5g07710.1 68418.m00884 exonuclease family protein contains exo...    31   0.35 
At2g47470.2 68415.m05924 thioredoxin family protein similar to p...    29   1.4  
At2g47470.1 68415.m05925 thioredoxin family protein similar to p...    29   1.4  
At5g22350.1 68418.m02607 expressed protein                             29   2.5  
At3g05480.1 68416.m00600 cell cycle checkpoint control protein f...    28   3.3  
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR...    28   4.3  
At5g54710.1 68418.m06813 ankyrin repeat family protein contains ...    27   5.7  
At5g44530.1 68418.m05455 subtilase family protein contains Pfam ...    27   5.7  
At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor...    27   5.7  
At3g50920.1 68416.m05575 phosphatidic acid phosphatase-related /...    27   7.6  

>At5g61390.1 68418.m07702 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 487

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 30  VDKGSPPQWSP-VYTVKGLLNIPYAELHEP 116
           VD GS   W+P V  +KG LN P A +H P
Sbjct: 383 VDSGSGSDWNPLVIPMKGFLNCPTARIHIP 412


>At5g07710.1 68418.m00884 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 468

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 30  VDKGSPPQWSPVYT-VKGLLNIPYAELH 110
           VD GS  +W+PV   +KG +N P A +H
Sbjct: 365 VDSGSTSEWNPVVNPMKGFVNYPNARIH 392


>At2g47470.2 68415.m05924 thioredoxin family protein similar to
           protein disulfide isomerase [Dictyostelium discoideum]
           GI:2627440; contains Pfam profile: PF00085 Thioredoxin
          Length = 266

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 3/25 (12%)
 Frame = +2

Query: 197 VSGLPTLRYFYKD-RAGH--NGNRD 262
           VSG PTL++F KD +AGH  +G RD
Sbjct: 213 VSGFPTLKFFPKDNKAGHDYDGGRD 237


>At2g47470.1 68415.m05925 thioredoxin family protein similar to
           protein disulfide isomerase [Dictyostelium discoideum]
           GI:2627440; contains Pfam profile: PF00085 Thioredoxin
          Length = 361

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 3/25 (12%)
 Frame = +2

Query: 197 VSGLPTLRYFYKD-RAGH--NGNRD 262
           VSG PTL++F KD +AGH  +G RD
Sbjct: 213 VSGFPTLKFFPKDNKAGHDYDGGRD 237


>At5g22350.1 68418.m02607 expressed protein
          Length = 427

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 15  FASGYVDKGSPPQWSPVYTVKGLLNIPYAELHEPFYAWYD 134
           F   ++    PPQ   V T   L  I YA L +   AW+D
Sbjct: 210 FMRSWITPREPPQDHVVLTTGALHQIDYASLRKAASAWHD 249


>At3g05480.1 68416.m00600 cell cycle checkpoint control protein
           family contains Pfam profile PF04139: Rad9; contains
           Prosite PS00976: Myristoyl-CoA:protein
           N-myristoyltransferase signature 2; similar to
           radio-resistance/chemo-resistance/cell cycle checkpoint
           control protein (GI:3869274) [Mus musculus]
          Length = 439

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
 Frame = +3

Query: 129 YDSKNSKSRIDYYGGMVKTYQFTSAVYPP-YGTSIKIAPVTTETEMNKETCLQ-VNSTQD 302
           +D+   K  +  Y GM KTY  T  V P     S+      +   M+     + + + Q 
Sbjct: 98  HDASKVKWTLQCYSGMKKTYWITCNVEPDIQHLSLDRGRFPSTLVMHPRNLSKLLGNFQS 157

Query: 303 QLQDIQSVLPDMTDFKYIRHRNNAGCRHGQMEMVQPV--GDKLNKYTMWVK-----YKKT 461
            LQ+I  +  D T F         G        V P   GD L    +W+       + T
Sbjct: 158 SLQEITIIATDQTSFPSDAASEIGGKAVEFRSYVDPTKDGDSLLHTQLWIDPSEEFLQYT 217

Query: 462 LKGDSVPIPVRYEMKGLNS 518
             GD  P+ + + +K L +
Sbjct: 218 HAGD--PVDITFSLKELKA 234


>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1109

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 97  MLNCMSHSMLGTTVRTANQESITMEVWSRLTSSRQRSTHPTVLL 228
           M NC+S  ++ T +  A+ E ITM   SRL +    ST+   LL
Sbjct: 677 MANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLL 720


>At5g54710.1 68418.m06813 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 598

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -2

Query: 508 PFISYRTGMGTESPFKVFLYLTHIVYLFSLSPTGCTISIWPCRHPALFLCRIYLKSVM 335
           PFI   T  G    FK+F    +I    SLS     +SI   R  AL +C +    +M
Sbjct: 454 PFIGKATA-GRTLAFKIFSVANNIALFTSLSIVTLLVSIISYRTKALKMCVVIAHKMM 510


>At5g44530.1 68418.m05455 subtilase family protein contains Pfam
           profiles: PF00082 subtilase family
          Length = 840

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 210 PPYGTSIKIAPVTTETEMNKETCLQVNST 296
           PPYG S+K++P      M +   L V  T
Sbjct: 776 PPYGVSMKVSPTQFSIAMGENQVLSVTLT 804


>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
           leaf shape1 (ALE1) identical to subtilisin-like serine
           protease [Arabidopsis thaliana] GI:16444944
          Length = 832

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 180 KTYQFTSAVYPPYGTSIKIAPV--TTETEMNKETCLQVNSTQ 299
           KT  +  +V PP GT++++ P   T   +  ++  ++ N TQ
Sbjct: 762 KTETYLGSVLPPNGTTVRLTPTWFTVPPQKTQDLDIEFNVTQ 803


>At3g50920.1 68416.m05575 phosphatidic acid phosphatase-related /
           PAP2-related contains Pfam profile PF01569: PAP2
           superfamily
          Length = 279

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -1

Query: 224 STVGWVDR*RELVSLDHTSIVIDS*FAVLTVVPSIEWLMQFSIGYI*ESLYCVYWTPLW 48
           S + W+      + L    + + S F  L V   +    Q  +G I  SL+C+ W  +W
Sbjct: 179 SVMEWLGTNGVSLFLSGLILALGSYFIRLRVSQKLHTSSQVVVGAIVGSLFCILWYTMW 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,319
Number of Sequences: 28952
Number of extensions: 268066
Number of successful extensions: 667
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)