Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31051
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    30   0.30 
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    28   1.6  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    28   1.6  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   6.5  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    25   8.6  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 528 IFKSVFNKYGFLQI*HKI*ISFPMCKSVIKRSLQK 424
           +FK +   Y FL + + + I+FP+  S +K+SL+K
Sbjct: 61  LFKVINTTYTFLYLRNSLTITFPLLNSSVKQSLKK 95


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 431 YRNKEKMKKVYLKKISEFLLYQILLKVHSYKQKNQTESISNATS 300
           Y   EK K++   K+ E+L     LKV+  ++ NQ  S S  ++
Sbjct: 46  YEKNEKSKEIIRSKVIEYLDRAEKLKVYLQEKNNQISSKSRVSN 89


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 437 EAYRNKEKMKKVYLKKISEFLLYQILLKVHSYKQKNQTESISNATSMTKLIY 282
           E  +N     K  L+K  + L  ++L ++   KQ+NQ    +NATS+ ++ Y
Sbjct: 509 EILKNNSADLKAQLEKQPQELENRLLQEISILKQRNQKFLKNNATSIQQIQY 560


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 446 TDLHIGKEIYILCQICKKPYLLNTDLNIPKYFFSI 550
           T ++     Y+LC+I     +++  LN  K+FF I
Sbjct: 93  TIIYFSMNPYMLCEILNARNVISCSLNTQKFFFII 127


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 218 EYGKNHFNGIYSSKMYRYMEFN 283
           ++  N +N ++ +  YRY++FN
Sbjct: 201 DFNLNEYNAMWKTSEYRYVDFN 222


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 138 YNLNNMNSTNTY*HYITPIVCMST 67
           YNL++ NSTN Y  Y +P +  ST
Sbjct: 231 YNLDSYNSTNNY--YSSPTMAPST 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,249
Number of Sequences: 5004
Number of extensions: 51706
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)