Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31051
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id...    29   4.3  

>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
           identical to GI:2347098
          Length = 371

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 225 PYSKITKSIKS*FVHLHFG*EHGKYISLIYNLNN 124
           PY+ +  S+ +  VH+  G  HG Y+SL+ + N+
Sbjct: 292 PYADVEYSLFAVVVHVGSGPNHGHYVSLVKSHNH 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,848,050
Number of Sequences: 28952
Number of extensions: 224219
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)