Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31047
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         25   0.83 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.4  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   4.4  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   4.4  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 127 YCLQ*NQKYTALILKLT-NFQNLFR*IHFAQSQSRK 23
           +CLQ     T+ +++L  +   L   +HFA+SQSR+
Sbjct: 97  FCLQEEGGTTSQLIELLGDAGKLLASVHFAESQSRR 132


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 398 NSFVILGWLIFQLSLSKNHSVFLLV 472
           N+F  L  LIF +SLS N +VF+++
Sbjct: 76  NTFAKL--LIFVVSLSGNSAVFIML 98


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = +2

Query: 236 DFLNNISH*LFTF*IIYVVFLMSIKFFFVC 325
           + L N+S   F + I+Y++  + + + ++C
Sbjct: 130 NLLRNVSVQFFVYVILYILATVFLAYVWIC 159


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = +2

Query: 236 DFLNNISH*LFTF*IIYVVFLMSIKFFFVC 325
           + L N+S   F + I+Y++  + + + ++C
Sbjct: 130 NLLRNVSVQFFVYVILYILATVFLAYVWIC 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,515
Number of Sequences: 336
Number of extensions: 3260
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)