Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31047
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    28   1.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.1  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    27   2.7  

>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 73  NSLVLKSMQYISGFIVDSIKFKLDK 147
           NSL+L+  +Y SGF +DS  F+  K
Sbjct: 207 NSLLLRDTEYFSGFGIDSEGFRTPK 231


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 253 FTLTIYVLNYLCGFPYVNQVFF 318
           F L ++VL+Y+ G+P+ N  FF
Sbjct: 21  FHLVLFVLSYVLGWPFTNFGFF 42


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 490 AEP*AAIINSPDAILNNKI-EIKQNTLLYTTKILFL 594
           A+  ++ I  PDAILN KI + K N+ LY + I F+
Sbjct: 227 ADKASSSIIKPDAILNKKIVDEKANSNLYFSAIKFI 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,148
Number of Sequences: 5004
Number of extensions: 50808
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)