Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31047
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U23176-2|AAC46717.2|  667|Caenorhabditis elegans Patched family ...    31   1.1  
AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical...    31   1.1  
AF067608-14|AAK95864.1|  551|Caenorhabditis elegans Hypothetical...    31   1.1  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    28   5.9  

>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical protein
            ZK675.1 protein.
          Length = 1405

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
 Frame = -2

Query: 608  YLYFIKN---KIFVVYNNVFCFISILLFNIASGLLIMAAYG---SALSFFMTLIKI 459
            YL+   N    I ++  +VFC IS+LLFN  + L+++   G     L+ FM L+ I
Sbjct: 1173 YLFLTGNLMQAISIITISVFCVISVLLFNPWAALMVVCILGIMTCELAGFMGLVGI 1228


>U23176-2|AAC46717.2|  667|Caenorhabditis elegans Patched family
           protein 2 protein.
          Length = 667

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
 Frame = -2

Query: 608 YLYFIKN---KIFVVYNNVFCFISILLFNIASGLLIMAAYG---SALSFFMTLIKI 459
           YL+   N    I ++  +VFC IS+LLFN  + L+++   G     L+ FM L+ I
Sbjct: 544 YLFLTGNLMQAISIITISVFCVISVLLFNPWAALMVVCILGIMTCELAGFMGLVGI 599


>AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical
           protein B0511.14b protein.
          Length = 470

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 60  NKFWKFVSFKINAVYFWFYCRQYKV*IRQN*FVKN 164
           +KFW F  F  +  YFWF  R++++  R+N  +K+
Sbjct: 183 SKFWDFAQFCRDFFYFWF--RKFRINSRKNNSIKS 215


>AF067608-14|AAK95864.1|  551|Caenorhabditis elegans Hypothetical
           protein B0511.14a protein.
          Length = 551

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 60  NKFWKFVSFKINAVYFWFYCRQYKV*IRQN*FVKN 164
           +KFW F  F  +  YFWF  R++++  R+N  +K+
Sbjct: 183 SKFWDFAQFCRDFFYFWF--RKFRINSRKNNSIKS 215


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +1

Query: 448 KSQCIFISVIKKLKAEP*AAIINSPDAILNNKIEIKQNTLLYTTKI 585
           K+  I  S    L  +  +A+ NS  A LNN +E+  NTLL T +I
Sbjct: 559 KTPVILASQSASLATKEPSALHNS-SATLNNSMELDNNTLLKTMQI 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,418,157
Number of Sequences: 27780
Number of extensions: 274555
Number of successful extensions: 586
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)