Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31047
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.55 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 569 NNVFCFISILLFNIASGLLIMAAYGSALSFFMTLI-KIHCDFY*DL 435
           NN+  F +++L      ++++  YGS + F MT + K  CD+Y +L
Sbjct: 5   NNIAAFQNVVLVKKVK-IVLLIFYGSIM-FSMTQVNKEECDYYQNL 48


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 4/16 (25%), Positives = 11/16 (68%)
 Frame = +3

Query: 69  WKFVSFKINAVYFWFY 116
           WK+V+  ++ ++ W +
Sbjct: 539 WKYVAMVLDRIFLWIF 554


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 728  DGVKRRPVNCNT 693
            DGVK  P++C T
Sbjct: 1164 DGVKSAPIHCQT 1175


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +3

Query: 69  WKFVSFKINAVYFWFY 116
           WKFV+  ++ ++ W +
Sbjct: 474 WKFVAMVLDRLFLWVF 489


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 719 KRRPVNCNTTHYRANWVPGP 660
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,342
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)