Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31044
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    29   0.048
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.59 
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    24   1.0  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    24   1.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   3.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.5  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 28.7 bits (61), Expect = 0.048
 Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
 Frame = +3

Query: 69   QAFRPKGLRISVQDVPKMTLFAFQGN---LNHKLDSTSVGTLSAE-VLDPVNGRW--VYE 230
            QAF+PKG  +S    P  T+     +   L   LD  +V T       D   G    +Y 
Sbjct: 1549 QAFKPKGYLLSAAVSPSKTVIDAGYDVPVLAQNLDWVAVMTYDFHGQWDKQTGHVAPLYY 1608

Query: 231  EPDLKLKVKDVVYYNAVFSINKKIYEKTNQQFTVTELEDPNASTDSQKPE 380
             P+      +VV+YNA FSIN  I E   ++  V  +     S   +KPE
Sbjct: 1609 HPE-----DEVVFYNANFSINYWISEGVPRRKIVMGMPLYGQSFRLEKPE 1653


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 505 TPNTPSCPTSVII*QYLPQMETYILTPN 588
           TP+T + P +V I +  PQM++Y  T N
Sbjct: 226 TPSTSASPPTVNIKKESPQMQSYRPTGN 253


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 465 RPGNQIAPRILFVRHTLC 412
           R G +++PR+  ++HT C
Sbjct: 340 RTGRKVSPRVNTIKHTSC 357


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 465 RPGNQIAPRILFVRHTLC 412
           R G +++PR+  ++HT C
Sbjct: 340 RTGRKVSPRVNTIKHTSC 357


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 234 PDLKLKVKDVVYYNAVFSINKKIYEK 311
           PD+  + KD +Y + +F +   I+EK
Sbjct: 70  PDVGKRDKDAIYGHPLFPLLALIFEK 95


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 132 AFQGNLNHKLDSTSVGTLSAEVLDPVNGR 218
           A  GNL   +D+         + DP+N R
Sbjct: 123 ASNGNLKFSIDNILKADFGRRITDPINIR 151


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 172 LVLSSLWFKLPWN 134
           L+++++W  L WN
Sbjct: 49  LLITNIWLSLEWN 61


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 172 LVLSSLWFKLPWN 134
           L+++++W  L WN
Sbjct: 49  LLITNIWLSLEWN 61


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +1

Query: 451 LIPWTKTFGKSSSIYRFITPNTP 519
           ++ W +  G S   Y+   PN P
Sbjct: 729 VVTWKRATGVSPGDYKDFKPNNP 751


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,644
Number of Sequences: 336
Number of extensions: 3906
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)