Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31044
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.84 
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    27   1.9  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   2.6  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    26   4.5  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    26   5.9  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   5.9  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   7.8  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   7.8  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   7.8  

>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 2/107 (1%)
 Frame = +3

Query: 315 NQQFTVTELED-PNASTDSQKPECKPTKTRVRGGKACAGQTIFEEQFDSLDENVWQIEQY 491
           NQ +  T  +  P+ S + Q P+       V   +      I    + +   N+      
Sbjct: 266 NQYYASTSKQSIPSQSQNLQPPQKASVLGTVNNYRQYQNSFISLNDYQAAQSNISSPSSR 325

Query: 492 IPI-YHPEYPFVSYQRNNLTVSTADGNLHINAKLQQHMPGFLDDSIY 629
            P  Y P  PF +YQ    + S     L    +    MP +   S+Y
Sbjct: 326 FPTPYSPSVPFGTYQEKEKSYSQDHAELSYYQQSPSMMPPYDRSSVY 372


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 453 DSLDENVWQIEQYIPIYHPEYPFVSYQRNNLTV 551
           D+ D   W + QY+      YP + ++ + +TV
Sbjct: 32  DNYDSFTWNVVQYLSNLEKRYPIMVFRNDEITV 64


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/47 (21%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 388 QQRRECEAAKRVPDKQY-SRSNLIPWTKTFGKSSSIYRFITPNTPSC 525
           Q + + E++  + D+   +++ ++ W+K  G   S+++F++   P C
Sbjct: 653 QAQSDFESSVELKDRSIVTKTTIMSWSKYQGTKESLFQFLSIYIPEC 699


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 14  VSDFIYKNIVRSNARCENTSFSPERTSNIRSRCPQ 118
           +SD    +I ++NA C N  F  E+ S+   RC Q
Sbjct: 281 ISDSTPSDIAQANASCSNAEFK-EKVSSAIIRCLQ 314


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +2

Query: 14  VSDFIYKNIVRSNARCENTSFSPERTSNIRSRCPQNDTVRVPRQLEP 154
           +   + +N+V     C+   F    +S +RS  P N  V+V    +P
Sbjct: 315 IQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDP 361


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
            1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 364  ILRNQNVSQQRRECEAAKRVPDKQYSRS 447
            ++ N      RRE E  +R  +++Y RS
Sbjct: 920  VIENAGTEAMRREAEERRRAEEEEYERS 947


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 402 VRGGKACAGQTIFEEQFDSLDENVWQIEQYIPI 500
           V+  K C   ++F EQF S D   W+     P+
Sbjct: 21  VKTYKPCTIPSVFSEQFTSEDITTWRSRWRAPV 53


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 366 SQKPECKPTKTRVRGGKACAGQTIFEEQ--FDSLDEN 470
           +Q P  +P+    RGG  C G  ++     +D+L EN
Sbjct: 220 TQWPSTQPSDGETRGGLLCKGGKLYRTNTAYDNLCEN 256


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 525 SYQRNNLTV-STADGNLHINAKLQQHMPG 608
           SY+R  + V S+   N H+N+  Q+ +PG
Sbjct: 463 SYRREEIDVMSSGSANKHVNSSRQRVVPG 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,838
Number of Sequences: 5004
Number of extensions: 65574
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)