Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31044
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 172 LVLSSLWFKLPWN 134
           L++++LW KL WN
Sbjct: 69  LLITNLWLKLEWN 81


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 148 KLPWNANSVILGTS*TDIRS-PFGRKACIFTSGI*AYDIFINKIRH 14
           ++ W   ++   +   D+   PF  + C+   G   YD F   +RH
Sbjct: 136 RVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRH 181


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 474 WQIEQYIPIYHP 509
           + IE+Y+ IYHP
Sbjct: 128 FSIERYLAIYHP 139


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 88  PFGRKACIFTSGI*AYDIFINKIRH 14
           PF  + C+   G   YD F   +RH
Sbjct: 161 PFDEQTCVLKFGSWTYDGFKVDLRH 185


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 454 IPWTKTFGKSSSIYRFITPN 513
           IP  +  G S+S  RFI PN
Sbjct: 372 IPRFRHIGPSTSFPRFIPPN 391


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 164  QHQRRDTECRGTGSSQRPMGVRRAR 238
            QHQ R+ E  G G ++   G   +R
Sbjct: 1233 QHQAREREGVGAGIAETSAGTSNSR 1257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,624
Number of Sequences: 438
Number of extensions: 4393
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)