Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31044
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38720.1 68418.m04683 expressed protein predicted protein, Dr...    32   0.32 
At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger) fa...    32   0.32 
At4g35110.2 68417.m04989 expressed protein                             30   1.7  
At4g35110.1 68417.m04988 expressed protein                             30   1.7  
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si...    29   2.2  
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ...    29   2.9  
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ...    29   2.9  
At5g57980.1 68418.m07254 eukaryotic rpb5 RNA polymerase subunit ...    29   3.9  
At1g29860.1 68414.m03650 WRKY family transcription factor simila...    29   3.9  
At3g26010.1 68416.m03240 F-box family protein contains Pfam:PF00...    28   5.1  
At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3...    28   6.8  
At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At4g24350.1 68417.m03494 phosphorylase family protein contains P...    27   9.0  
At3g08740.1 68416.m01016 elongation factor P (EF-P) family prote...    27   9.0  

>At5g38720.1 68418.m04683 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 306

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 285 SINKKIYEKTNQQFTVTEL-EDPNASTDSQKPECKPTKTRVRGGK 416
           ++ KKI  K N++ +  EL EDP A+    K   KP + +++ GK
Sbjct: 17  TVGKKIQRKKNEKVSNVELSEDPQAAQLQAKSSEKPNRKKIQKGK 61


>At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 296

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 379 NVSQQRRECEAAKRVPDKQYSRSNLIPWTKTFGKSSSI 492
           N S +RR  + ++ V +   SRS  +PW ++FG+  S+
Sbjct: 118 NPSDRRRIIQRSRDVLENSSSRSRPLPWRRSFGRPGSV 155


>At4g35110.2 68417.m04989 expressed protein
          Length = 386

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 285 SINKKIYEKTNQQFTVTELEDPNASTDSQKPECKPTKT 398
           S+ KKI  +T   FT +   DP+    + KPE KP++T
Sbjct: 96  SVKKKIVSETKNSFTSSSSGDPD-DFFNHKPEKKPSQT 132


>At4g35110.1 68417.m04988 expressed protein
          Length = 386

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 285 SINKKIYEKTNQQFTVTELEDPNASTDSQKPECKPTKT 398
           S+ KKI  +T   FT +   DP+    + KPE KP++T
Sbjct: 96  SVKKKIVSETKNSFTSSSSGDPD-DFFNHKPEKKPSQT 132


>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 399

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 474 WQIEQYIPIYHPEYPFVSYQRNNLTVSTADGNLHINAKLQQHMPGFLD 617
           WQI+   P Y   YPF++Y+ + +T+        IN  L +H  G LD
Sbjct: 208 WQIQS--PFYINAYPFLAYKSDPITID-------INYALFEHNKGILD 246


>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 169

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +3

Query: 315 NQQFTVTELEDPNASTDSQKPECKPTKTRVRGGK-ACAGQTIFEEQFDSLDENVWQI-EQ 488
           +Q +     +D  ++T + K      + R+   K A  G  +   Q  S   N+ Q+  +
Sbjct: 53  SQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLAFVGAKVKPNQ--SQPSNLPQLLPR 110

Query: 489 YIPIYHPEYPFVSYQRNNLTVSTADG 566
           Y P Y+P Y  +SYQ+N +  +T +G
Sbjct: 111 YDPQYNPRYDPMSYQQNRMANNTNNG 136


>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
            SP|Q42510 Pattern formation protein EMB30 (GNOM)
            {Arabidopsis thaliana}; contains Pfam profile PF01369:
            Sec7 domain
          Length = 1375

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 27/120 (22%), Positives = 55/120 (45%)
 Frame = +3

Query: 114  PKMTLFAFQGNLNHKLDSTSVGTLSAEVLDPVNGRWVYEEPDLKLKVKDVVYYNAVFSIN 293
            P+ TLFAF  ++  ++ + +V TL+    D + G W     D  LK++ +          
Sbjct: 787  PEETLFAFSHDMKPRMATLAVFTLANTFGDSIRGGW-RNIVDCLLKLRKL---------- 835

Query: 294  KKIYEKTNQQFTVTELEDPNASTDSQKPECKPTKTRVRGGKACAGQTIFEEQFDSLDENV 473
             ++  ++  +F + E E+  + +D      + TK   R G +  G+       D+++E+V
Sbjct: 836  -QLLPQSVIEFEINE-ENGGSESDMNNVSSQDTKFNRRQGSSLMGRFSHFLALDNVEESV 893


>At5g57980.1 68418.m07254 eukaryotic rpb5 RNA polymerase subunit
           family protein similar to SP|P19388 DNA-directed RNA
           polymerase II 23 kDa polypeptide (EC 2.7.7.6) {Homo
           sapiens}; contains Pfam profiles PF03871: RNA polymerase
           Rpb5 N-terminal domain, PF01191: RNA polymerase Rpb5
           C-terminal domain
          Length = 210

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
 Frame = +3

Query: 24  LFIKISYAQMPDVKIQAFRPKGLRISVQDVPKMTLFAFQGNLNHK------LDSTSVGTL 185
           LF+  +    P  KI  F P+G ++ V  + K      + +  H+      +  T+   +
Sbjct: 57  LFVSANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARM 116

Query: 186 SAEVLDPVNGRWVYEEPDLKLKVKDVVYYNAVFSINKKIYEKTNQQFTVTELEDP 350
           +   L+ +    V+EE +L   + +    N  + ++ +  +K    +TV + + P
Sbjct: 117 AVSELNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLP 171


>At1g29860.1 68414.m03650 WRKY family transcription factor similar
           to DNA-binding protein 2 GI:4322940 from [Nicotiana
           tabacum]
          Length = 282

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 84  KGLRISVQDVPKMTLFAFQGNLNHKLDSTSVGTLSAEVL 200
           K +  S QD P + +  ++G  NH + ST  GT++AE L
Sbjct: 170 KRVERSFQD-PSIVITTYEGKHNHPIPSTLRGTVAAEHL 207


>At3g26010.1 68416.m03240 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 414

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 485 AVYTDLSPRIPLRVLPA**FNSIYRRWKPT 574
           A++T++  R+PLR++    F S+ + WK T
Sbjct: 13  AIWTEILARLPLRIIAR--FKSVSKTWKST 40


>At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3.6)
           plant glutamate receptor family, PMID:11379626
          Length = 903

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 465 ENVWQIEQYIPIYHPEYPFVSYQRNNLTVSTADGNLHINA-KLQQHMPGFLDDSIYSGTL 641
           + VW + Q I  +  +   VS+ +N +      GNLH++A K+      FL+  +    +
Sbjct: 315 DTVWLLAQAIDDFFKKGGNVSFSKNPIISELGGGNLHLDALKVFDGGKIFLESILQVDRI 374

Query: 642 NLFQWVYFRQQRHASN 689
            L   + F   R+  N
Sbjct: 375 GLTGRMKFTSDRNLVN 390


>At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 629

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 552 STADGNLHINAKLQQHMPGFLDDSIYSGTL 641
           S ADG L +  +L++ + GF+DD +  G L
Sbjct: 250 SDADGVLKLYQELKEKLGGFVDDGVVYGQL 279


>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
           PF01048: Phosphorylase family
          Length = 336

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 96  ISVQDVPKMTLFAFQGNLNHKLDSTSVGTLSAEVLDPVNGRWVYEEPDLKLKVKDVVY 269
           I V +V  +  F   GN+N+   S S+G +S        G W +  PD    V+D+ Y
Sbjct: 113 IDVFNVKGIVHFGIAGNMNN---SMSIGDVSIPKQITNAGLWDWLNPDKVKGVEDIAY 167


>At3g08740.1 68416.m01016 elongation factor P (EF-P) family protein
           similar to SP|P33398 Elongation factor P (EF-P)
           {Escherichia coli O157:H7}; contains Pfam profile
           PF01132: Elongation factor P (EF-P)
          Length = 236

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = -1

Query: 484 SICQTFSSRESNCSSNIVCPAHALPPRTLVFVGLHSGF*ESVLALGSSSSVTVNCWFVFS 305
           S+C  +S+   +  + +  PA  + PRT  F  +H     + +  G++  V    W V  
Sbjct: 16  SLCIPYSTASFSSMNRLALPAVRISPRTNRFPRIHCSMSANDIKAGTNIEVDGAPWRVLE 75

Query: 304 YI 299
           ++
Sbjct: 76  FL 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,254
Number of Sequences: 28952
Number of extensions: 333028
Number of successful extensions: 1051
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)