Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31043
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.36 
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   5.9  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   7.8  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   7.8  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   7.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   7.8  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   7.8  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 670 CLRCWGKSGNWNSWR 626
           C+ CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +3

Query: 495 YPQYFVNMEVKNKMDYVKMMDGCLDEKICYNYGIIKEKRTIRNVRQLFQFPDL 653
           +P  F++      +DY K M   + + I  ++GI +     RN+  +  F  +
Sbjct: 255 FPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFGINENLLEFRNINTITDFSQI 307


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 167 VLQSRPGLQHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKN 310
           + Q+  GL++   +G++H+         D +G+I   +FGI   L  N
Sbjct: 503 IKQTLKGLEYLHSRGIVHRDIKGANILVDNKGKIKISDFGISKKLELN 550


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = -2

Query: 419 EHSLVHVDSGVACCFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKESDLVHHH 246
           ++ +++VD  +A CFV+  +  G    LE+ + +  +  + +  F +LG+   L+ HH
Sbjct: 539 DNLILNVDGCIAVCFVDLLRNCGAF-TLEEANEYI-NLGILNGMF-VLGRSIGLIGHH 593


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 387 YARVYMNQGMFLYAYYIAIIQRSDTASFVLPAPYEAYPQYFVNMEVKNKMDYVKMMDGCL 566
           +A   +NQ ++LY  Y + + R  +   +    Y  Y   FVN ++++ +  + + D  +
Sbjct: 235 FALKTINQ-IYLYFSYPSCLVRVYSIGII----YNIYQSGFVNKKMESVVKGISLFDSFI 289

Query: 567 DEKICYNYGIIKEKRTIRN-VRQLF 638
            E +     ++  +   RN VRQ++
Sbjct: 290 PEALPILSDLLPSEENYRNLVRQVY 314


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 565 LTRKYVIITELSKKNEQFV--MYANYSNSLTYPNNEDRIAYLTG 690
           LT   + + E+S+K    +  + ANYSN +T P  E     LTG
Sbjct: 260 LTVNCIALDEVSEKAMNCLADLLANYSNFITQPTIERLWTILTG 303


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 275 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLG 180
           G  S  +HHH++ +  H  +  L G   EV G
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,655
Number of Sequences: 5004
Number of extensions: 56572
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)