Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31043
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0513 - 16681227-16683936,16685572-16685966                       29   2.6  
02_01_0123 + 896128-896429,896578-896608,896903-896995,897096-89...    29   2.6  
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924...    28   6.1  
09_02_0060 + 3729613-3729863,3730377-3730392                           28   8.0  

>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 203  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 301
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>02_01_0123 +
           896128-896429,896578-896608,896903-896995,897096-897158,
           897279-897390,897947-898032,898845-898903,898990-899092,
           899182-899242,899472-899554,899635-899715,900018-900077
          Length = 377

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 528 NKMDYVKMMDGCLDEKICYNYGIIKEKRTIRNVRQLFQFPDLPQQRRQNCL 680
           N   Y    D  +D  I     + ++ + ++  R    FPDLP++RR + L
Sbjct: 106 NISSYKGSSDEFIDANIQLALAVARKLKELKGTRSCIVFPDLPEKRRASQL 156


>04_04_0350 +
           24591002-24591123,24592020-24592091,24592343-24592448,
           24593138-24593242,24593693-24593815,24594163-24594630,
           24595226-24595351,24595430-24595516,24595615-24595701,
           24595807-24595903,24596519-24596636,24596923-24596995,
           24597504-24597566,24597666-24597832,24598444-24598631,
           24598909-24599057,24599193-24599442,24599597-24599855,
           24599977-24600073,24606696-24606776,24606914-24606970,
           24607264-24607395,24607476-24607562,24607941-24608049,
           24608134-24608270,24608841-24608945,24609566-24609654,
           24609757-24609859,24609960-24610064,24610282-24610293,
           24611013-24611078
          Length = 1279

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +2

Query: 104 RKAKEDFVTFLQR*R-DQL*S*VLQSRPGLQHRGQQGLLHKHESLRKFHDDVQGRIPSQE 280
           R  ++DF T+    R D       Q   GL H   QG++H+  +      DV+  I   +
Sbjct: 605 RTLRQDFETYTSSFRVDDAWRLFRQIVEGLAHVHSQGIIHRDLTPNNIFFDVRNDIKIGD 664

Query: 281 FGILDLLR 304
           FG+   L+
Sbjct: 665 FGLAKFLK 672


>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 428 LLHSYYPALRHRQLRSTCSIRSLSSIFCQ 514
           L+H+ +P  R+R  R+TC  R++ S+ C+
Sbjct: 32  LVHAKWPPSRYRSYRATC-CRAVPSLLCR 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,813,701
Number of Sequences: 37544
Number of extensions: 330040
Number of successful extensions: 806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)