Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31043
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   3.6  
SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)           29   4.7  
SB_5702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_23948| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1)                      28   8.2  

>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 670

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +2

Query: 191 QHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKNEGRSHRAVQAVLLCQRF*MF 370
           Q  G  G + + E + K   D+QG++PS    + D+ R  +  S     AV+L Q    F
Sbjct: 208 QTAGDSGGISREEFITKIASDIQGKLPS----LFDVDRVRKNLSEITPTAVVLLQELDRF 263

Query: 371 LQNSMLRQ 394
             N ++R+
Sbjct: 264 --NVLIRR 269


>SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)
          Length = 251

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 251 DVQGRIPSQEFGILDLLR-KNEGRSHRAVQAVLLCQRF*MFLQNSMLRQSL 400
           D  G + S    I  + R K+ GR+HRA   VL+ Q   M ++  ++ QSL
Sbjct: 192 DFFGGVVSDSDRISRITRIKHHGRAHRAGDEVLVLQMMVMSIKMKLINQSL 242


>SB_5702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 486 YEAYPQYFVNMEVKNKMDYVKMMDGCLDEKICYNYGIIKEKRTIRNVRQ 632
           Y+ +P + +  + K      K+  G LD  + Y YG+ +EK     V+Q
Sbjct: 137 YKNHPFHDIEEQQKQIKTKQKVYLGLLDPPVVYGYGVDREKEKQLKVKQ 185


>SB_23948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
 Frame = +3

Query: 420 LYAYYIAIIQRSDTASFVLPAPYEAYPQYFVNMEVKNKMDYVKMMDGCLDE--KICYNYG 593
           L+ YY A ++++DT +    A   A P  F++ E  +    +  ++G + +  +    YG
Sbjct: 14  LFDYYAAALEKNDTKAM---AMLYALPCTFLSNEGSSVYTDLAPLEGAISQGRRFYKKYG 70

Query: 594 IIKEKRTIRN----------VRQLFQFPDLPQQRRQNC 677
           I+  +  +RN          V+  +Q+ D  QQ   NC
Sbjct: 71  IVAAQPDVRNKYPITDKIARVKVNWQYVDKDQQEVYNC 108


>SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1)
          Length = 579

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 513 NMEVKNKMDYVKMMDGCLDEKI 578
           N+E KN +D VK + GCLD  +
Sbjct: 328 NVEFKNALDGVKSVIGCLDRTV 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,798,536
Number of Sequences: 59808
Number of extensions: 395572
Number of successful extensions: 841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)