Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31041
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 89 4e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 53 2e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 51 7e-08
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 43 2e-05
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 33 0.015
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 33 0.026
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.75
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 4.0
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 5.3
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 24 9.3
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 24 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 88.6 bits (210), Expect = 4e-19
Identities = 38/41 (92%), Positives = 41/41 (100%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 126
+KYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 335 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 52.8 bits (121), Expect = 2e-08
Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 123
+ Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 390 RSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.2 bits (117), Expect = 7e-08
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +1
Query: 13 SVWIGGSILASLSTFQQMWISKEEYDESG 99
+VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 42.7 bits (96), Expect = 2e-05
Identities = 18/41 (43%), Positives = 31/41 (75%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 126
+ ++ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 340 RMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 33.5 bits (73), Expect = 0.015
Identities = 13/33 (39%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = +1
Query: 4 KKYSVWIGGSILASL-STFQQMWISKEEYDESG 99
++++V+IGG++LA + + MW+SK E++E G
Sbjct: 346 RRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 32.7 bits (71), Expect = 0.026
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 117
++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 382 QRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.75
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 19 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 120
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 182 ELGRAQHHTAPGSRGRAA*KHLRWT 108
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 5.3
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 173 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 340
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 1 PKKYSVWIGGSILASLSTFQQMW-ISKEEYDE 93
P+ VW G I ++ T + +W ++K+ DE
Sbjct: 539 PRAVDVWACGVIYMAMRTGRHLWRVAKKSEDE 570
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 194 RLRSELGRAQH-HTAPGSRGRAA*KHL 117
R R + GR + HTAP RGR H+
Sbjct: 95 RGRGQRGRGNYGHTAPNRRGRGRGGHM 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,515
Number of Sequences: 5004
Number of extensions: 26741
Number of successful extensions: 44
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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