Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31041
(447 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18
SB_56| Best HMM Match : Actin (HMM E-Value=0) 89 2e-18
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 89 2e-18
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 83 1e-16
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 43 1e-04
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 28 3.1
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_54442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) 27 7.1
SB_46128| Best HMM Match : VQ (HMM E-Value=4.6) 27 9.3
SB_56910| Best HMM Match : ATP-synt_E_2 (HMM E-Value=5.4) 27 9.3
SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 88.6 bits (210), Expect = 2e-18
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 126
+KYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 298 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 88.6 bits (210), Expect = 2e-18
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 126
+KYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 336 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 88.6 bits (210), Expect = 2e-18
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 126
+KYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 335 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 88.6 bits (210), Expect = 2e-18
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 126
+KYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 335 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 88.6 bits (210), Expect = 2e-18
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 126
+KYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 336 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 88.6 bits (210), Expect = 2e-18
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 126
+KYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 309 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 82.6 bits (195), Expect = 1e-16
Identities = 36/41 (87%), Positives = 38/41 (92%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 126
+KYSVWIGGSILASLSTFQQMWI+KEEY E GP IVHRKCF
Sbjct: 109 RKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 42.7 bits (96), Expect = 1e-04
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 126
++Y+VW GGS+LAS F + +K +YDE GP I F
Sbjct: 300 QRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 30.7 bits (66), Expect = 0.57
Identities = 11/33 (33%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +1
Query: 4 KKYSVWIGGSILASLSTFQQ-MWISKEEYDESG 99
+K+ V++GG++LA + + W++++EY+E G
Sbjct: 367 RKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 4 KKYSVWIGGSILASL 48
K+++ WIGGSILASL
Sbjct: 216 KRFNPWIGGSILASL 230
>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 159 HSTGVTRPRCLEALAVDDAGAGLVVFLLRDPHLLEGGQGSQDGSTDPYGVLL 4
H+ V+ + A D+G ++ LRD H+ G +G DG +G+++
Sbjct: 665 HNNSVSFRKGSRETAKSDSGVEMIS--LRDNHVGNGDEGKTDGGNAGFGLVI 714
>SB_54442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.1 bits (57), Expect = 7.1
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = -1
Query: 228 QFSGITRYNVLTVAFRTRTSTTPHSTGVTRPRCLEALAVDDAGAGLVVFLLRDPHLLEGG 49
Q++ +T N++ RTST T+ + D A +LL L E
Sbjct: 25 QYAALTSCNLIGQINNIRTSTQRTRRIETKELLCRTKIIGDKAAA---YLLIKKALKETR 81
Query: 48 QGSQDGSTDPYG 13
G +DG D YG
Sbjct: 82 NGYEDGDVDDYG 93
>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
Length = 352
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 222 SGITRYNVLTVAFRTRTSTTPHSTGVT 142
+GIT N++T A T TSTT + VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320
>SB_46128| Best HMM Match : VQ (HMM E-Value=4.6)
Length = 333
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 213 TRYNVLTVAFRTRTSTTPHSTGVT 142
+RYN+ T +FR T+TT ST VT
Sbjct: 270 SRYNIETASFRHATTTT-QSTSVT 292
>SB_56910| Best HMM Match : ATP-synt_E_2 (HMM E-Value=5.4)
Length = 329
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 159 HSTGVTRPRCLEALAVDDAGAGLVVFLLRDPHLLEGGQGSQDGSTDPYGVL 7
HS + PR + ++ A + ++ L PH L GS+D YG++
Sbjct: 231 HSLNIRHPRPYPSREIESATSEQIIGTL--PHRLSFHTGSRDWGQTSYGIM 279
>SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 125 KHLRWTMPGPDSSYSSFE-IHICWKVDREARMDP 27
K++RW PD + SSF+ + + V+R+ +DP
Sbjct: 176 KYVRWPPLYPDWNQSSFDLVEVLSAVNRDLNIDP 209
>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1104
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 139 PRDPGAVWCCARPSSERNRQYVVPSDT 219
P DPG++W PS E ++Y P DT
Sbjct: 262 PNDPGSLWNFVSPSME--KRYGNPRDT 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,931,308
Number of Sequences: 59808
Number of extensions: 236305
Number of successful extensions: 477
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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