Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31039
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)             118   7e-27
SB_51867| Best HMM Match : TP2 (HMM E-Value=9.2)                       26   0.47 
SB_58103| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)       29   3.1  
SB_22416| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)             29   4.1  
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_48230| Best HMM Match : DUF152 (HMM E-Value=1.5)                    28   7.2  
SB_49697| Best HMM Match : DUF602 (HMM E-Value=3)                      28   9.5  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score =  118 bits (283), Expect = 7e-27
 Identities = 53/75 (70%), Positives = 64/75 (85%)
 Frame = +2

Query: 452 RNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAA 631
           +  LDL+ANVVH +SLP +K RH ++D +IIREQTEGEY++LEHESVPGVVE LKIIT  
Sbjct: 89  KTELDLFANVVHCRSLPGIKTRHDNIDIVIIREQTEGEYTSLEHESVPGVVEMLKIITRR 148

Query: 632 KSERIAKFAFDYAVE 676
           KS+RIAKFAFDYA +
Sbjct: 149 KSQRIAKFAFDYATK 163



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +2

Query: 149 SSVTTEKNQPRATKEGRIKCTLIPGDGVGPELVYAVQEVFK 271
           S+ T E +   A   GR   TLIPGDGVGPELV  V+++FK
Sbjct: 49  STTTEESDDLTAPFGGRHTVTLIPGDGVGPELVNCVKQMFK 89



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +3

Query: 675 KMGRKKVTAVHKANIME 725
           K  RKKVT VHKANIM+
Sbjct: 163 KHNRKKVTCVHKANIMK 179


>SB_51867| Best HMM Match : TP2 (HMM E-Value=9.2)
          Length = 370

 Score = 25.8 bits (54), Expect(2) = 0.47
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 398 ATPDFSHTGELQTLNMKLRNALDLYAN 478
           A+PDF   G  Q     L N  DLY N
Sbjct: 90  ASPDFRFRGRRQRRTTDLPNVRDLYTN 116



 Score = 25.0 bits (52), Expect(2) = 0.47
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +2

Query: 566 YSALEHESVPGVVECLKIITAAKSERIAKFAFDYAVEDGPQEGHR 700
           Y+  +  +VP   EC    T+      A  A     E G   GHR
Sbjct: 114 YTNKKDNAVPAASECASATTSITGSHQAMTAMQSEEEPGASMGHR 158


>SB_58103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 609 HSTTPGTDSCSKAEYSPSVCSLMMMQSTSWCLHFTLGND 493
           +STTP T S +K  Y  S   L+   + +WC +   GND
Sbjct: 87  NSTTPVTSSAAKPGYESSKAELLFGSNNAWCAND--GND 123


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 358 VYDVFEWCTKCWIHFRKEKGFKVHWNAGRLENFLYSVDKLGSYTIPRNQGAFDTTF 191
           +Y  F     CW+HF+K+K  + H N     +F  + D L    +  N+G  D  F
Sbjct: 46  MYVRFGGTASCWMHFKKDKALE-HKN---FTDFTITPDDLERIAMIGNKGGVDVLF 97


>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
          Length = 1206

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 142 THKFGNNGEKSTEGNKGRSYQMHLDSWGW 228
           TH  G  G  + +G  G S +M LD+WGW
Sbjct: 781 THGAGRKGLDAWDGTHG-SGRMDLDAWGW 808


>SB_22416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 190 LCCPRLIFLRCYRT 149
           LCCP L +LRCY+T
Sbjct: 22  LCCPILSYLRCYKT 35


>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 263 VFKAASIPVDFESFFFSEVNPTLSAPLEDV 352
           VFK A+ P  F  F   E+NPTL A   D+
Sbjct: 216 VFKIANCPRAFVDFSKGEINPTLEARRSDL 245


>SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)
          Length = 380

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 570 QLWNMNPFP-AWWSV*RSSPQRNPSVSRNSLSTTPWKMGRKK 692
           +LW ++    ++W++   +PQ  PS    S+S +PWK G ++
Sbjct: 168 RLWKIDDIALSYWNL-SITPQCTPSYPHASISGSPWKPGAER 208


>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 413 SHTGELQTLNMKLRNALDLYANV-VHVKSLPNVKCRHQDVD 532
           SHTGE+Q +  +LR   DL ++V +    L N   R Q ++
Sbjct: 159 SHTGEVQAMQTQLRQFQDLVSSVTMENAQLKNASMRAQQLN 199


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 519 TRTWTASSSESRPRESTQLWNMNPFPAWWSV*RSSPQRNPSVSRNSLSTTPW 674
           T TW  +SS++    S++ WN     A WS   ++  +  + + N  ST+ W
Sbjct: 601 TGTWNETSSKAWNENSSKAWNETSLAA-WSEYVTALNKTATGAWNEPSTSTW 651


>SB_48230| Best HMM Match : DUF152 (HMM E-Value=1.5)
          Length = 579

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/80 (25%), Positives = 32/80 (40%)
 Frame = +2

Query: 518 HQDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAAKSERIAKFAFDYAVEDGPQEGH 697
           H+  +   +RE  +   ++ E ES+PGV      ITA K  ++        V+  P    
Sbjct: 179 HEQGETGFVRENIQRYSTSKEVESIPGVTTKTVTITADKDPQVYPKKAPPVVKTKPYSNT 238

Query: 698 RCPQGQHHGSWATDCSYAAA 757
              Q   H + +T     AA
Sbjct: 239 ASKQVTEHVTTSTSSQMQAA 258


>SB_49697| Best HMM Match : DUF602 (HMM E-Value=3)
          Length = 294

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +3

Query: 54  RFYQIQTCPFLAGIFFELLCRDLNMLERVYTQVR*QRRKINRGQQRKVVSNAP*FLGMV* 233
           R Y   +   L+ I  EL C   N+L  V    R  RR++  G+QR+  ++A   +  V 
Sbjct: 56  RHYNDTSTAELSQIKLEL-CEIKNLLLSVVEDNRLMRRRLEMGEQREPDASASARVSRVD 114

Query: 234 DPS 242
           DPS
Sbjct: 115 DPS 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,224,486
Number of Sequences: 59808
Number of extensions: 538770
Number of successful extensions: 1481
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)