Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31039
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA... 157 6e-39
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 156 1e-38
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 154 7e-38
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 146 1e-35
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 146 2e-35
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 139 2e-33
At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas... 91 1e-18
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 40 0.002
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 36 0.029
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 35 0.051
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 35 0.067
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 33 0.16
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 31 0.63
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 31 0.63
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 31 1.1
At1g14820.3 68414.m01773 SEC14 cytosolic factor family protein /... 30 1.5
At1g14820.2 68414.m01772 SEC14 cytosolic factor family protein /... 30 1.5
At1g14820.1 68414.m01771 SEC14 cytosolic factor family protein /... 30 1.5
At1g40133.1 68414.m04768 hypothetical protein 29 3.4
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 28 7.7
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 28 7.7
>At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+
isocitrate dehydrogenase subunit 1 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 367
Score = 157 bits (382), Expect = 6e-39
Identities = 85/180 (47%), Positives = 118/180 (65%)
Frame = +2
Query: 131 GKGVHTSSVTTEKNQPRATKEGRIKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFF 310
G G+ T SVT PR TLIPGDG+GP + AV++V +A P+ FE +
Sbjct: 18 GSGIQTRSVTY---MPRPGDGAPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIFFEKY-- 72
Query: 311 SEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGELQTLNMKLRNALDLYANVVHV 490
+V+ +S +V+ SI NK+C+KG L TP G + +LN++LR LDL+A++V+
Sbjct: 73 -DVHGEMSRVPPEVMESIRKNKVCLKGGLKTPV---GGGVSSLNVQLRKELDLFASLVNC 128
Query: 491 KSLPNVKCRHQDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAAKSERIAKFAFDYA 670
+LP + RH++VD ++IRE TEGEY+ LEHE VPGVVE LK+IT SERIAK+AF+YA
Sbjct: 129 FNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 188
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 684 RKKVTAVHKANIME 725
RKKVTAVHKANIM+
Sbjct: 193 RKKVTAVHKANIMK 206
>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 367
Score = 156 bits (379), Expect = 1e-38
Identities = 93/201 (46%), Positives = 124/201 (61%)
Frame = +2
Query: 68 SNMSFLSRNIFRAVMQGSQHVGKGVHTSSVTTEKNQPRATKEGRIKCTLIPGDGVGPELV 247
S SF R++ GS+ + T SVT PR TLIPGDGVGP +
Sbjct: 2 SRQSFSLLKNLRSIASGSK-----IQTRSVTY---MPRPGDGKPRPVTLIPGDGVGPLVT 53
Query: 248 YAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGE 427
AVQ+V +A PV FE F EV+ + + E ++ SI NK+C+KG L TP G
Sbjct: 54 NAVQQVMEAMHAPVYFEPF---EVHGDMKSLPEGLLESIKKNKVCLKGGLKTPV---GGG 107
Query: 428 LQTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEYSALEHESVPGVVE 607
+ +LN+ LR LDL+A++V+ +LP + RH++VD ++IRE TEGEY+ LEHE VPGVVE
Sbjct: 108 VSSLNVNLRKELDLFASLVNCFNLPGLASRHENVDIVVIRENTEGEYAGLEHEVVPGVVE 167
Query: 608 CLKIITAAKSERIAKFAFDYA 670
LK+IT SERIAK+AF+YA
Sbjct: 168 SLKVITKFCSERIAKYAFEYA 188
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 684 RKKVTAVHKANIME 725
RKKVTAVHKANIM+
Sbjct: 193 RKKVTAVHKANIMK 206
>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 368
Score = 154 bits (373), Expect = 7e-38
Identities = 78/154 (50%), Positives = 109/154 (70%)
Frame = +2
Query: 209 TLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIK 388
TLIPGDG+GP + AV++V +A PV FE + EV + E+V+ S+ NK+C+K
Sbjct: 42 TLIPGDGIGPLVTGAVEQVMEAMHAPVHFERY---EVLGNMRKVPEEVIESVKRNKVCLK 98
Query: 389 GILATPDFSHTGELQTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEY 568
G LATP G + +LNM+LR LD++A++V+ ++P + RH++VD ++IRE TEGEY
Sbjct: 99 GGLATPV---GGGVSSLNMQLRKELDIFASLVNCINVPGLVTRHENVDIVVIRENTEGEY 155
Query: 569 SALEHESVPGVVECLKIITAAKSERIAKFAFDYA 670
S LEHE VPGVVE LK+IT SERIA++AF+YA
Sbjct: 156 SGLEHEVVPGVVESLKVITKFCSERIARYAFEYA 189
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 684 RKKVTAVHKANIME 725
RKKVTAVHKANIM+
Sbjct: 194 RKKVTAVHKANIMK 207
>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 363
Score = 146 bits (355), Expect = 1e-35
Identities = 91/201 (45%), Positives = 121/201 (60%)
Frame = +2
Query: 68 SNMSFLSRNIFRAVMQGSQHVGKGVHTSSVTTEKNQPRATKEGRIKCTLIPGDGVGPELV 247
S SF R++ GS+ + T SVT PR TLIPGDGVGP +
Sbjct: 2 SRQSFSLLKNLRSIASGSK-----IQTRSVTY---MPRPGDGKPRPVTLIPGDGVGPLVT 53
Query: 248 YAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGE 427
AVQ+V +A PV FE F EV+ + + E ++ SI NK+C+KG L TP G
Sbjct: 54 NAVQQVMEAMHAPVYFEPF---EVHGDMKSLPEGLLESIKKNKVCLKGGLKTPV---GGG 107
Query: 428 LQTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEYSALEHESVPGVVE 607
+ +LN+ LR LDL+A++V+ +LP + RH++VD ++IRE TEGEY+ LEHE VPGVVE
Sbjct: 108 VSSLNVNLRKELDLFASLVNCFNLPGLASRHENVDIVVIRENTEGEYAGLEHEVVPGVVE 167
Query: 608 CLKIITAAKSERIAKFAFDYA 670
LK SERIAK+AF+YA
Sbjct: 168 SLKFC----SERIAKYAFEYA 184
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 684 RKKVTAVHKANIME 725
RKKVTAVHKANIM+
Sbjct: 189 RKKVTAVHKANIMK 202
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 146 bits (353), Expect = 2e-35
Identities = 90/205 (43%), Positives = 124/205 (60%), Gaps = 3/205 (1%)
Frame = +2
Query: 77 SFLSRNIFRAVMQGSQHV-GKGVHTSSVTTEKNQPRATKEGRIKCTLIPGDGVGPELVYA 253
+FL+R R + GS + G +S ++ + IK TL PGDG+GPE+ +
Sbjct: 5 AFLAR---RLIGNGSSQILGTSSSSSGPFISVSRAFFSSSTPIKATLFPGDGIGPEIAES 61
Query: 254 VQEVFKAASIPVDF-ESFFFSEVNPTLSAPLE-DVVNSIAVNKICIKGILATPDFSHTGE 427
V++VF AA + +D+ E F +EV+P ++ L D + S+ NK+ +KG +ATP G
Sbjct: 62 VKQVFTAADVVIDWDEQFVGTEVDPRTNSFLTWDNLQSVLKNKVGLKGPMATP--IGKGH 119
Query: 428 LQTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEYSALEHESVPGVVE 607
++LN+ LR L+LYANV SLP K R+ DVD I IRE TEGEYS LEH+ V GVVE
Sbjct: 120 -RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVKGVVE 178
Query: 608 CLKIITAAKSERIAKFAFDYAVEDG 682
LKIIT S R+A++AF YA G
Sbjct: 179 SLKIITRKASMRVAEYAFLYAKTHG 203
Score = 31.1 bits (67), Expect = 0.83
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +3
Query: 681 GRKKVTAVHKANIME 725
GRKKV+A+HKANIM+
Sbjct: 203 GRKKVSAIHKANIMQ 217
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 139 bits (337), Expect = 2e-33
Identities = 77/163 (47%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Frame = +2
Query: 200 IKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFF-SEVNPTLSAPLE-DVVNSIAVN 373
I TL PGDG+GPE+ +V++VF A +P+++E + +E++P + L + + S+ N
Sbjct: 44 ITATLFPGDGIGPEIAESVKKVFTTAGVPIEWEEHYVGTEIDPRTQSFLTWESLESVRRN 103
Query: 374 KICIKGILATPDFSHTGELQTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQ 553
K+ +KG +ATP G ++LN+ LR L+LYANV SLP K R+ DVD I IRE
Sbjct: 104 KVGLKGPMATP--IGKGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIREN 160
Query: 554 TEGEYSALEHESVPGVVECLKIITAAKSERIAKFAFDYAVEDG 682
TEGEYS LEH+ V GVVE LKIIT S R+A++AF YA G
Sbjct: 161 TEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFLYAKTHG 203
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +3
Query: 681 GRKKVTAVHKANIME 725
GR++V+A+HKANIM+
Sbjct: 203 GRERVSAIHKANIMQ 217
>At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase
family protein similar to NAD+ dependent isocitrate
dehydrogenase subunit 2 [Arabidopsis thaliana]
GI:1766048; contains Pfam profile PF00180 dehydrogenase,
isocitrate/isopropylmalate family
Length = 294
Score = 90.6 bits (215), Expect = 1e-18
Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Frame = +2
Query: 251 AVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGEL 430
AV +V A PV FE++ N ++ +VV+SI NK+C+ G +
Sbjct: 15 AVHQVMDAMQAPVYFETYIIKGKN--MNHLTWEVVDSIRKNKVCLNGRVNN--------- 63
Query: 431 QTLNMKLRNALDLYANVVHVKSLPNVKCRHQDVDCIIIREQTEGEYSALEHESVPGVVEC 610
+L R LDL+A++V +L RH++VD ++IRE TEGEY+ EHE VPGV+E
Sbjct: 64 -SLCGGARKELDLFASLVDCFNLNGQPSRHENVDIVVIRENTEGEYAGREHEVVPGVIES 122
Query: 611 LKI-ITAAKSERIAKFAFDYA 670
++ +T S+RIAK+AF+YA
Sbjct: 123 FQVTMTKFWSDRIAKYAFEYA 143
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 39.9 bits (89), Expect = 0.002
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Frame = +2
Query: 197 RIKCTLIPGDGVGPELVYAVQEVFKAA----SIPVDFESF-FFSEVNPTLSAPLEDVVN- 358
R TL+PGDG+GPE++ + V + A + DF+ F + PL + +
Sbjct: 43 RYNITLLPGDGIGPEVISVAKNVLQKAGFLQGLEFDFQEMPFGGAALDLVGVPLPEETST 102
Query: 359 ----SIAVNKICIKGILATPDFSH-TGELQTLNMKLRNALDLYANVVHVKSLPNV----- 508
S A+ I G + H E+ LN +R L+++AN+ LP +
Sbjct: 103 AAKQSDAILLGAIGGYKWDKNEKHLRPEMGLLN--IRRDLNVFANLRPATVLPQLVDAST 160
Query: 509 --KCRHQDVDCIIIREQTEGEY-----SALEHESVPGVVECLKIITAAKSERIAKFAFDY 667
K Q VD +I+RE T G Y +E+ V +I A + +RIA+ AF+
Sbjct: 161 LKKEVAQGVDMMIVRELTGGIYFGEPRGITINENGEEVGFNTEIYAAHEIDRIARVAFET 220
Query: 668 A 670
A
Sbjct: 221 A 221
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 35.9 bits (79), Expect = 0.029
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 22/180 (12%)
Frame = +2
Query: 197 RIKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVN------PTLSAPL-EDVV 355
R TL+PGDG+GPE+V + V + A ++ F F E+ + PL E+ +
Sbjct: 42 RYTITLLPGDGIGPEVVSIAKNVLQQAG-SLEGVEFNFREMPIGGAALDLVGVPLPEETI 100
Query: 356 NSIAVNKICIKGILATPDFSHTGE-LQTLN--MKLRNALDLYANVVHVKSLPNV------ 508
++ + + G + + + + L+ +++R AL ++AN+ LP +
Sbjct: 101 SAAKESDAVLLGAIGGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTL 160
Query: 509 -KCRHQDVDCIIIREQTEGEY-----SALEHESVPGVVECLKIITAAKSERIAKFAFDYA 670
+ + VD +++RE T G Y +E+ V ++ A + +RIA+ AF+ A
Sbjct: 161 KREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETA 220
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 35.1 bits (77), Expect = 0.051
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 22/180 (12%)
Frame = +2
Query: 197 RIKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVN------PTLSAPL-EDVV 355
R L+PGDG+GPE++ + V + A E F F E+ + PL E+
Sbjct: 46 RYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLE-FDFKEMPVGGAALDLVGVPLPEETF 104
Query: 356 NSIAVNKICIKGILATPDFSHTGELQTLNMK---LRNALDLYANVVHVKSLPNV------ 508
+ ++ + G + + + M LR L ++AN+ LP +
Sbjct: 105 TAAKLSDAILLGAIGGYKWDKNEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTL 164
Query: 509 -KCRHQDVDCIIIREQTEGEY-----SALEHESVPGVVECLKIITAAKSERIAKFAFDYA 670
K + VD +I+RE T G Y +E+ V +I A + +RIA+ AF+ A
Sbjct: 165 KKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETA 224
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 34.7 bits (76), Expect = 0.067
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -3
Query: 675 STA*SKANFAIRSDFAAVMIFKHSTTPGTDSCSKAEYSPSVC--SLMMMQSTSWCLHFTL 502
ST K +F + F +I KH PG CS+ Y + ++ + S LHFT
Sbjct: 194 STLAVKDDFLVAGGFQGELICKHLDRPGVSFCSRMTYDDNAITNAIEIYNKPSGALHFTA 253
Query: 501 GND 493
N+
Sbjct: 254 SNN 256
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -3
Query: 675 STA*SKANFAIRSDFAAVMIFKHSTTPGTDSCSKAEYSPSVC--SLMMMQSTSWCLHFTL 502
ST + F + F +I KH PG CS+ Y + ++ + S LHFT
Sbjct: 192 STLAVRDKFLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAIEIYNKPSGALHFTA 251
Query: 501 GND 493
N+
Sbjct: 252 SNN 254
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 675 STA*SKANFAIRSDFAAVMIFKHSTTPGTDSCSKAEYSPSVC--SLMMMQSTSWCLHFTL 502
ST K + F +I KH PG CS+ Y+ + ++ + +++S LHF
Sbjct: 194 STLAVKERLLVAGGFQGELICKHLDRPGVSFCSRTTYTENAITNAVDIYRNSSGALHFMA 253
Query: 501 GND 493
N+
Sbjct: 254 SNN 256
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 675 STA*SKANFAIRSDFAAVMIFKHSTTPGTDSCSKAEYSPSVC--SLMMMQSTSWCLHFTL 502
ST K + F +I KH PG CS+ Y+ + ++ + +++S LHF
Sbjct: 188 STLAVKERLLVAGGFQGELICKHLDRPGVSFCSRTTYTENAITNAVDIYRNSSGALHFMA 247
Query: 501 GND 493
N+
Sbjct: 248 SNN 250
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 1102
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 624 PQRNPSVSRNSLSTTPWKMGRKKV 695
PQRNPSVS+ + PW + RKK+
Sbjct: 405 PQRNPSVSKEPVH-EPWPLHRKKI 427
>At1g14820.3 68414.m01773 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; similar to
phosphatidylinositol/phosphatidylcholine transfer
protein SP:P24280 [Saccharomyces cerevisiae (Baker's
yeast)]
Length = 252
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 242 LVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKG 391
LV + KAA + VD++ + S V PT P +V + + K+C++G
Sbjct: 35 LVARSMDPVKAAKMFVDWQKWRASMVPPTGFIPESEVQDELEFRKVCLQG 84
>At1g14820.2 68414.m01772 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; similar to
phosphatidylinositol/phosphatidylcholine transfer
protein SP:P24280 [Saccharomyces cerevisiae (Baker's
yeast)]
Length = 239
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 242 LVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKG 391
LV + KAA + VD++ + S V PT P +V + + K+C++G
Sbjct: 22 LVARSMDPVKAAKMFVDWQKWRASMVPPTGFIPESEVQDELEFRKVCLQG 71
>At1g14820.1 68414.m01771 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; similar to
phosphatidylinositol/phosphatidylcholine transfer
protein SP:P24280 [Saccharomyces cerevisiae (Baker's
yeast)]
Length = 239
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 242 LVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKG 391
LV + KAA + VD++ + S V PT P +V + + K+C++G
Sbjct: 22 LVARSMDPVKAAKMFVDWQKWRASMVPPTGFIPESEVQDELEFRKVCLQG 71
>At1g40133.1 68414.m04768 hypothetical protein
Length = 663
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 164 EKNQPRATKEGRIK-CTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAP 340
E + R KE R+ LI P+ +++ + PVD F EV+PT +AP
Sbjct: 309 EDKERRLAKEKRLADAGLISPQAASPDETQD-RDIVPDVTAPVDPTPFEAQEVDPTAAAP 367
Query: 341 LEDVVNSIAVNKICIKGILATPDFS 415
L + + ++ + + T D +
Sbjct: 368 LPEAIVALPASDKAVGKRARTDDLT 392
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 311 SEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGELQTLNMKLRNALDLYANVVHV 490
S NP +P+ ++ +K K + A P F +QTLN+ L N+ + A V
Sbjct: 1599 STSNPDQVSPVHSATTALRSDKAADKDLDAPPGFDSGSHVQTLNV-LENSSERKAFAVKK 1657
Query: 491 KSL 499
+ L
Sbjct: 1658 RPL 1660
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 311 SEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGELQTLNMKLRNALDLYANVVHV 490
S NP +P+ ++ +K K + A P F +QTLN+ L N+ + A V
Sbjct: 1599 STSNPDQVSPVHSATTALRSDKAADKDLDAPPGFDSGSHVQTLNV-LENSSERKAFAVKK 1657
Query: 491 KSL 499
+ L
Sbjct: 1658 RPL 1660
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,842,402
Number of Sequences: 28952
Number of extensions: 367058
Number of successful extensions: 1118
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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