Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31038
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)                31   0.97 
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               30   1.3  
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)                 28   5.2  
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)                 28   6.9  
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)                    28   6.9  
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_15725| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 793

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
 Frame = +2

Query: 185 QEQGALVNEGREDASIAVQGSSGYTAPDGTPIQITYIAD-----ANGYQPSGAHLPTTPA 349
           + +G++ +      S +V GS G  +P GTP+    +A      A  ++ S A LP T A
Sbjct: 492 EREGSIHSSSGHSVSGSVTGSIGERSPVGTPVASPVVAPVMSPLAAAHRASSASLPVTTA 551

Query: 350 --PLPIPDYI 373
             P P P Y+
Sbjct: 552 VSPAPEPTYL 561


>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
          Length = 850

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 523 YCETRHINDRQCYGLRCFNNS 461
           +C+   +N R CYG+RC+N +
Sbjct: 438 HCDLAMMNGRTCYGVRCYNKT 458


>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 299

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
 Frame = +2

Query: 239 QGSSGYTAPDGTPIQITYIAD--ANGY-----QPSGAHL--PTTPAPLPIPDYIARAIEY 391
           Q S G+T     PIQ +Y A   + GY      P+ AH   P T  P+  P Y A    Y
Sbjct: 14  QHSQGFTTVQNPPIQTSYTAPQASTGYAVQGTAPTAAHYGPPQTQRPVVQPAYSAGTTAY 73

Query: 392 IRTHP 406
            ++ P
Sbjct: 74  AQSAP 78


>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 217 TALVYERSLFLATDSVAGLILVLVFVRENVSILRHNL 107
           T L+  R+L +   ++  L   L+ +R N+ ILRHNL
Sbjct: 583 TLLILRRNLLILRHNLLILRHNLIILRRNLLILRHNL 619


>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
          Length = 942

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +2

Query: 182 GQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGA----HL-PTTP 346
           GQ + + +N+ R+  +   Q   G    DG   ++T +    G QP       H+ PTTP
Sbjct: 351 GQARPSYMNKRRQYPAQGGQPGYGAMPLDGPMGRLT-VQQPVGVQPVSLMDQRHIVPTTP 409

Query: 347 APLPIPDYIARAIEYIRTHPPKPEVGQRI 433
              P P   AR++ +   +P   E+   I
Sbjct: 410 IEHPAPPLNARSLLHFECYPRNQELTDEI 438


>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
          Length = 1266

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 167 WSDIGTGICPGKRQHLATQFGHQ 99
           W+  GT  CPG++  L  Q GH+
Sbjct: 857 WNAFGTHTCPGEQLCLVGQLGHR 879


>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
          Length = 514

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +2

Query: 203 VNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARA 382
           ++ G   A+   +G+   T P G P Q  Y        P G H  TTP   P  +Y  + 
Sbjct: 425 LHPGDTHATTTPRGTHATTTPRGVPTQQLY--------PGGTHATTTPRRYPRNNY-TQG 475

Query: 383 IEYIRTHP 406
           +   + HP
Sbjct: 476 VPTQQLHP 483


>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +2

Query: 167 SNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTP 346
           S+  +   Q A      +   IA +       P+GTP+ +  + D    +PS +   +  
Sbjct: 122 SSATASSSQAAQPTRQTQPIDIASRVQPSAPTPEGTPVLVQSLPDVE--EPSASARSSAE 179

Query: 347 APLPIPD 367
            P P+P+
Sbjct: 180 QPPPLPE 186


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 254 YTAPDGTPIQITYIA--DANGYQPSGAHLPTTPAPLPIPD 367
           Y +P  T     Y A  D  GY PS   +P++P P P  D
Sbjct: 561 YISPTATAGDRRYPARPDPMGYSPSEMGVPSSPLPRPASD 600


>SB_15725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 589 GTGPPLEXXXXXFLTLIKVYFTYC 518
           GTGPPLE      L   ++Y+T C
Sbjct: 18  GTGPPLEVDGIDKLDAQRLYYTRC 41


>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 299 QQCK*FEWEYHQGQCSRLNLGRRWMHPHG 213
           Q  +  EW   +G    LN G +W HP G
Sbjct: 473 QTVRSMEWRRTKGATPTLNTGPQWGHPKG 501


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +2

Query: 92   GEADAQIVSQD----ADVFPDKYQYQYQTSNGISGQE 190
            G+ +AQ    +     DV P+   Y Y+T  G+ GQE
Sbjct: 1144 GQGEAQYADDEWDYVEDVVPEAETYGYETYQGVEGQE 1180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,317,272
Number of Sequences: 59808
Number of extensions: 373531
Number of successful extensions: 912
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)