Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31037
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 34 0.027
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 32 0.11
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 32 0.11
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 0.19
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 31 0.25
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.25
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.44
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 30 0.44
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 29 0.59
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 1.4
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.4
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 3.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 4.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 4.1
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 4.1
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 26 5.5
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 7.2
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 7.2
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 26 7.2
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 9.6
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 25 9.6
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 9.6
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.6
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 9.6
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.027
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 448 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 627
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 628 KISL 639
K L
Sbjct: 196 KAML 199
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 31.9 bits (69), Expect = 0.11
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Frame = +1
Query: 454 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 630
++++LE K + LQ ++D KT + S + A LE + E ++EE K
Sbjct: 29 QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82
Query: 631 ISLSIRIKPLTIEGLSV-DKLRQKAQELLGVHRQTRDRENDLEERQKRQDYDLKELK 798
+ ++IK + EGLS+ KL K +E + + +LE + + + + + LK
Sbjct: 83 VEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQWISNAVEELERQAELIEAEAESLK 139
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 31.9 bits (69), Expect = 0.11
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +1
Query: 583 QLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDRENDLEER 762
+L+R K ++Q E+EKK+ +I ++ L +KL ++ L R+ +R+ L E+
Sbjct: 97 RLKREKERQQREQEKKLREQEKIAAKKMKEL--EKLEKERIRLQEQQRRKEERDQKLREK 154
Query: 763 QKRQ 774
++ Q
Sbjct: 155 EEAQ 158
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 31.1 bits (67), Expect = 0.19
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 618
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678
Query: 619 EEKKISLSIRIKPLTIE 669
E K ++K T E
Sbjct: 679 ENAKREAEEKVKRETEE 695
Score = 30.3 bits (65), Expect = 0.34
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 618
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 619 EEKKISLSIRIKPLTIEGL---SVDKLRQKAQELLGVHRQTRDR-ENDLEERQKRQ 774
E+ K + K E + +K +++A+E R+ ++ + + EE KR+
Sbjct: 631 EKAKREAEEKAKREAEEKAKREAEEKAKREAEE--NAKREAEEKAKREAEENAKRE 684
Score = 29.5 bits (63), Expect = 0.59
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 618
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 636 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEENAKREAEEKVKRETE 694
Query: 619 EEKK 630
E K
Sbjct: 695 ENAK 698
Score = 27.5 bits (58), Expect = 2.4
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Frame = +1
Query: 451 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEEE 624
E++ RLE E KR+A QA ++A + +K K E + + E N K + EE+
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN-AKREAEEK 608
Query: 625 KKISLSIRIKPLTIEGL---SVDKLRQKAQELLGVHRQTRDR-ENDLEERQKRQ 774
K + K E + +K +++A+E R+ ++ + + EE+ KR+
Sbjct: 609 AKREAEEKAKREAEEKAKREAEEKAKREAEE--KAKREAEEKAKREAEEKAKRE 660
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 30.7 bits (66), Expect = 0.25
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Frame = +1
Query: 445 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFG--LSNAQLERNKTKEQLE 618
++E ++RLE A Q + + K+ + T G S N+ K
Sbjct: 234 LKEAKERLEAANASYQKLRREHKELALYHEKKTHSLVCNLNGERKSFGDFVENEVKSYKH 293
Query: 619 EEKKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDREND-LEERQKRQDYDLKEL 795
E I S+R + I+G +K+ + +++L + + END + + D +K+L
Sbjct: 294 EYANICESLRRALVLIQGSCTEKILRFKEKILDLLEMKQQEENDRISHIEYENDLTVKKL 353
Query: 796 KK 801
K+
Sbjct: 354 KR 355
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.7 bits (66), Expect = 0.25
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 609
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A L + K K
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220
Query: 610 QLEEEKKISLSIRIKPLT-----IEGLSVDKLRQKAQELLGVHRQTRDRENDLEERQKRQ 774
+ +KK S I+ T E +S +++ AQ Q ++ EER+
Sbjct: 221 NRKNQKKKSTKQNIEATTENDALSESISTPDIQKVAQSEDVDAEQDTVADSKEEERRDIA 280
Query: 775 DYDL 786
+ DL
Sbjct: 281 NDDL 284
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.9 bits (64), Expect = 0.44
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Frame = +1
Query: 445 IEEKRQRLE--EAEKKRQAMLQAMKD--ASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 612
+EE R+ + A Q +LQA ++ A + + + EN +L++ + KE+
Sbjct: 537 MEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEK 596
Query: 613 LEEEKKISLSIRIKPLTIEGLSVDKL-RQKAQELLGVHRQTRDRENDLEERQKR-QDYDL 786
++KK L + K + ++L Q AQ+ L RQ R+ E+R KR Q+
Sbjct: 597 KRDKKK-QLKLA-KEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQ 654
Query: 787 KELKKDK 807
+EL++ K
Sbjct: 655 QELERQK 661
Score = 26.6 bits (56), Expect = 4.1
Identities = 22/114 (19%), Positives = 52/114 (45%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 621
+IEE+ +R +E E K+ + +D K + K+ E +L ++ LE
Sbjct: 575 EIEEENKRKQERELKKIREKEKKRDKKK---QLKLAKEEERQRREAERLAEQAAQKALEA 631
Query: 622 EKKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDRENDLEERQKRQDYD 783
+++ + + ++ + +K QEL R+ + ++ + E++ K+Q +
Sbjct: 632 KRQEEARKKREEQRLKR----EQEKKQQELERQKREEKQKQKEREKKLKKQQQE 681
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 29.9 bits (64), Expect = 0.44
Identities = 24/117 (20%), Positives = 53/117 (45%)
Frame = +1
Query: 445 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 624
+ E +L+ ++K+ + D+ + +QK +S + E+ + ++EE
Sbjct: 73 LSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEE- 131
Query: 625 KKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDRENDLEERQKRQDYDLKEL 795
LT+E + V +L ++ + L + R + +E++K++ DLKEL
Sbjct: 132 -----------LTVESMEVVRLTRQVETLSTQYSIQRSQWVREDEKKKKEIQDLKEL 177
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 29.5 bits (63), Expect = 0.59
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Frame = +1
Query: 460 QRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNA--QLERNKTKEQLE-EEKK 630
Q + E + +Q Q D K + TIQ + ER+ T+ L+ E +
Sbjct: 24 QSVSEMKSIKQKSFQYFDDYEKNVSDKTIQFQKLQMTAKEIIDAFERDSTQRTLQIESLE 83
Query: 631 ISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDRENDLEERQKRQDYDLKELKK 801
+ + + L E L+ + LR+K Q L + + L E+ ++ + ++ LKK
Sbjct: 84 SKIGEQERDLNNEKLASETLREKTQLLEKENGALKVENGYLYEKSRKLEEEMAHLKK 140
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 466 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 627
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 454 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 624
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 532 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 675
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.6 bits (56), Expect = 4.1
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Frame = +1
Query: 445 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS-ENFGLSNAQLERNKTKEQLEE 621
+E+ Q + +K + + + A+K + T +KK+ +++ ++E + K L +
Sbjct: 390 LEKFEQTERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIEE-QLKFLLNK 448
Query: 622 EKKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDREN----DLEERQKRQDYDLK 789
EKK+ S IE LS +K +A+ L H + N DL R ++++ L
Sbjct: 449 EKKLKKS-------IEALSFEK--SEAENSLSSHDIDSQKLNSEIADLSLRLQQEELSLD 499
Query: 790 ELKK 801
+++K
Sbjct: 500 DIRK 503
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 294 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 178
P+FA + L LF+Q+ P + + FW S+ L+ +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 613 LEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDRENDLEERQKRQDYDLKE 792
+EE +I +S+ +KPL I ++ QK V D+E E K+Q+ +
Sbjct: 13 IEETNRIRISLGLKPLDIS----EEKPQKELSDASVKSSYVDQEQQAYENWKKQEQEEIN 68
Query: 793 LKKDK 807
KK++
Sbjct: 69 RKKEE 73
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 62 SLGTGSWTGSTATLECGAAA 3
++GTG W GS TL G AA
Sbjct: 96 AIGTGVWVGSKNTLREGGAA 115
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +1
Query: 445 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 624
I EKR LEE +++ + + + + K ++++++ E + + +LE K + + ++
Sbjct: 65 IIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRRKQKKV 121
Query: 625 KKISLSIRI 651
K S R+
Sbjct: 122 NKEKNSPRL 130
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 448 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 621
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 622 EKKI 633
+++I
Sbjct: 192 DEEI 195
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 7.2
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +1
Query: 445 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 624
+ EK+ + K A ++A + ASK+G T S+N L + +R + K E
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175
Query: 625 KKIS---LSIRIKPLTIEGLSVDKLRQKAQE 708
IS L I T +G++ L E
Sbjct: 176 WAISEPELEAEIAWNTTQGITESDLESLKDE 206
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 62 SLGTGSWTGSTATLECGAAA 3
++GTG W GS+ +L G AA
Sbjct: 96 AIGTGVWVGSSKSLYRGGAA 115
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 604 KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDREN 747
+E++ + S IR T+E +D LR++ ++ + +HR RD ++
Sbjct: 658 QEKISKFTDPSSVIRSDLWTVEVDHLDLLRKQIEDSISLHRDVRDSKD 705
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 9.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 560 SLFFWMVKLGPVLLASFMAWSIAW 489
SL+FW L P +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 109 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 14
CW I G S L+ AL+L PA+ NV
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNV 323
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 664 IEGLSVDKLRQKAQELLGVHRQTRDRENDLEERQKRQDYDLK 789
IE VD +R LL R T D D+EE +K +++DL+
Sbjct: 341 IEKYGVDTIRYY---LLKRGRLTSDSNFDIEELEKDEEHDLR 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,587
Number of Sequences: 5004
Number of extensions: 33609
Number of successful extensions: 164
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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