Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31036
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0725 - 23894215-23894412,23894660-23894803,23895058-238951...    27   3.3  
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405...    26   7.6  

>06_03_0725 -
           23894215-23894412,23894660-23894803,23895058-23895126,
           23895197-23895267,23895357-23895444,23895522-23895707,
           23895805-23895903,23896002-23896082,23896575-23896634,
           23896656-23896779,23897026-23897120,23897205-23897331,
           23897559-23897662,23897883-23897945
          Length = 502

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 134 TNPLTYCYYNMNKIFLLFILF 72
           TN L +CYY +NK  + F+ F
Sbjct: 171 TNSLVHCYYELNKGTIRFLEF 191


>05_07_0079 -
           27539389-27539892,27540059-27540343,27540453-27540550,
           27540951-27541042,27541155-27541259,27541360-27541567,
           27542469-27542472,27542742-27542765,27545025-27546266
          Length = 853

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 89  KIFCSYYNSNKLMDWLQNCRTRPARVEGPISGASDFY 199
           + + +   S+K + WL+  +T P  V+G  S  S  Y
Sbjct: 532 RFWTTLQGSSKDIGWLKRTKTLPCSVDGLFSNHSPLY 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,249,868
Number of Sequences: 37544
Number of extensions: 72987
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)