BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV31036 (322 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical ... 27 4.0 AC024748-4|AAF60410.1| 251|Caenorhabditis elegans Hypothetical ... 25 9.2 >AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical protein F23H11.2 protein. Length = 865 Score = 26.6 bits (56), Expect = 4.0 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +2 Query: 119 KLMDWLQNCRTRPARVEGPISGASDFY 199 K DW+QNC R P++G FY Sbjct: 673 KRPDWIQNCTARQTHF-NPVTGPIRFY 698 >AC024748-4|AAF60410.1| 251|Caenorhabditis elegans Hypothetical protein Y110A2AR.1 protein. Length = 251 Score = 25.4 bits (53), Expect = 9.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 150 RDRPASRAPSVARPIFI 200 R RPA+R PS + PIF+ Sbjct: 162 RRRPATRTPSRSEPIFL 178 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,274,667 Number of Sequences: 27780 Number of extensions: 65826 Number of successful extensions: 188 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 187 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 188 length of database: 12,740,198 effective HSP length: 71 effective length of database: 10,767,818 effective search space used: 376873630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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