Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31036
         (322 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical ...    27   4.0  
AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical ...    25   9.2  

>AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical
           protein F23H11.2 protein.
          Length = 865

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 119 KLMDWLQNCRTRPARVEGPISGASDFY 199
           K  DW+QNC  R      P++G   FY
Sbjct: 673 KRPDWIQNCTARQTHF-NPVTGPIRFY 698


>AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.1 protein.
          Length = 251

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 150 RDRPASRAPSVARPIFI 200
           R RPA+R PS + PIF+
Sbjct: 162 RRRPATRTPSRSEPIFL 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,274,667
Number of Sequences: 27780
Number of extensions: 65826
Number of successful extensions: 188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)