Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31033
         (781 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    37   0.49 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.5  
UniRef50_Q1IKI4 Cluster: TPR repeat protein precursor; n=1; Acid...    34   3.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.1 bits (82), Expect = 0.49
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = +1

Query: 451 NPQTQPTEFFAGSSQRVTFPIRW*ILRSAALTRASLSNFLRLEPREL 591
           NP+TQP +F AGSSQ   F        +  L    L+N LRL P EL
Sbjct: 69  NPKTQPMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYEL 115


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +2

Query: 458 RHSPLSFLPDLLNGSRFRSGGRF 526
           R  PLSF PDLL+GSRFR+G  +
Sbjct: 393 RCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q1IKI4 Cluster: TPR repeat protein precursor; n=1;
           Acidobacteria bacterium Ellin345|Rep: TPR repeat protein
           precursor - Acidobacteria bacterium (strain Ellin345)
          Length = 353

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +1

Query: 403 FNFIFIYHGNYLSICLNPQTQPTEFFAGSSQRVTFPIRW*ILRSAALTRASLSNFLRLEP 582
           F+F  +  G+Y  + ++   +  E F   SQ V+  +R  + RSAA TR ++S      P
Sbjct: 83  FDFANLRPGSYEVVAIDGVMEAREQFIVQSQLVSLSLRMPVTRSAAPTRGTISVAELKVP 142

Query: 583 RELIYSLDYA-SIFSKGYQLR*EKK 654
            +  + LD A    SKG+    EK+
Sbjct: 143 DKAKHLLDKAQGALSKGHSDEAEKQ 167


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,887,584
Number of Sequences: 1657284
Number of extensions: 11874301
Number of successful extensions: 23675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23672
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)