Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31033
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    25   9.2  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   9.2  

>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 43  YTRNAKLNEPPDYS-INKIFQD 105
           YTR+ + ++ PDY+ + K+F+D
Sbjct: 256 YTRSLRFDDKPDYAYLRKLFRD 277


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 172 NILFLENSEITTQGLYKSLLHCNLEIFY 89
           NI+FLE S  + QG++  L  C L   Y
Sbjct: 351 NIIFLEYSRTSKQGMWSILSPCILIAVY 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,592
Number of Sequences: 5004
Number of extensions: 56981
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)