Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31033
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.6  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   9.7  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   9.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 166 LFLENSEITTQGLYKSLLHCNLEIF 92
           + +++    ++ LYKS LHC   I+
Sbjct: 240 MMMQSGRAKSEILYKSTLHCWATIY 264


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 166 LFLENSEITTQGLYKSLLHCNLEIF 92
           + +++    ++ LYKS LHC   I+
Sbjct: 240 MMMQSGRAKSEILYKSTLHCWATIY 264


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 293 ERKTHSKYECTDCNITSNSEPLTSQY 370
           E K  +KY+  D ++  N+E L + Y
Sbjct: 21  EDKYTTKYDNVDIDVVLNTERLLNAY 46


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 293 ERKTHSKYECTDCNITSNSEPLTSQY 370
           E K  +KY+  D ++  N+E L + Y
Sbjct: 21  EDKYTTKYDNVDIDVVLNTERLLNAY 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,233
Number of Sequences: 438
Number of extensions: 4074
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)